Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JR4 entry

There are 2 chains in PDB entry 9JR4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 22ASP 612
E
 PRO 332HIS 529
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9JR4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
24 53Right-handed alpha
Helix 2
AA2
B
55 82Right-handed alpha
Helix 3
AA3
B
83 88Right-handed 310
Helix 4
AA4
B
90 103Right-handed alpha
Helix 5
AA5
B
109 114Right-handed alpha
Helix 6
AA6
B
114 129Right-handed alpha
Helix 7
AA7
B
146 155Right-handed alpha
Helix 8
AA8
B
157 194Right-handed alpha
Helix 9
AA9
B
198 205Right-handed alpha
Helix 10
AB1
B
206 208Right-handed 310
Helix 11
AB2
B
218 220Right-handed 310
Helix 12
AB3
B
221 252Right-handed alpha
Helix 13
AB4
B
265 267Right-handed 310
Helix 14
AB5
B
275 277Right-handed 310
Helix 15
AB6
B
278 283Right-handed alpha
Helix 16
AB7
B
293 301Right-handed alpha
Helix 17
AB8
B
303 318Right-handed alpha
Helix 18
AB9
B
324 331Right-handed alpha
Helix 19
AC1
B
365 385Right-handed alpha
Helix 20
AC2
B
389 393Right-handed 310
Helix 21
AC3
B
397 413Right-handed alpha
Helix 22
AC4
B
414 421Right-handed alpha
Helix 23
AC5
B
431 465Right-handed alpha
Helix 24
AC6
B
469 471Right-handed 310
Helix 25
AC7
B
472 485Right-handed alpha
Helix 26
AC8
B
498 502Right-handed 310
Helix 27
AC9
B
503 508Right-handed alpha
Helix 28
AD1
B
513 536Right-handed alpha
Helix 29
AD2
B
541 545Right-handed 310
Helix 30
AD3
B
550 564Right-handed alpha
Helix 31
AD4
B
565 567Right-handed 310
Helix 32
AD5
B
568 578Right-handed alpha
Helix 33
AD6
B
584 591Right-handed alpha
Helix 34
AD7
B
591 602Right-handed alpha
Helix 35
AD8
E
337 343Right-handed alpha
Helix 36
AD9
E
365 370Right-handed alpha
Helix 37
AE1
E
383 387Right-handed 310
Helix 38
AE2
E
405 409Right-handed 310
Helix 39
AE3
E
416 422Right-handed alpha
Helix 40
AE4
E
438 443Right-handed alpha
Helix 41
AE5
E
502 505Right-handed 310
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There are 7 sheets in PDB entry 9JR4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
137 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
356 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 380anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 363first strand
Strand 2
E
524 526parallel
Strand 3
E
391 392anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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