Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JR9 entry

There are 2 chains in PDB entry 9JR9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	TYR 912
B	MET 1	TYR 912

There are 69 helices in PDB entry 9JR9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	31	Right-handed alpha
Helix 2	AA2	A	34	55	Right-handed alpha
Helix 3	AA3	A	77	88	Right-handed alpha
Helix 4	AA4	A	142	160	Right-handed alpha
Helix 5	AA5	A	179	193	Right-handed alpha
Helix 6	AA6	A	219	238	Right-handed alpha
Helix 7	AA7	A	263	277	Right-handed alpha
Helix 8	AA8	A	340	350	Right-handed alpha
Helix 9	AA9	A	380	395	Right-handed alpha
Helix 10	AB1	A	406	417	Right-handed alpha
Helix 11	AB2	A	419	429	Right-handed alpha
Helix 12	AB3	A	441	446	Right-handed alpha
Helix 13	AB4	A	480	499	Right-handed alpha
Helix 14	AB5	A	530	534	Right-handed 310
Helix 15	AB6	A	537	554	Right-handed alpha
Helix 16	AB7	A	557	580	Right-handed alpha
Helix 17	AB8	A	581	585	Right-handed 310
Helix 18	AB9	A	598	615	Right-handed alpha
Helix 19	AC1	A	617	619	Right-handed 310
Helix 20	AC2	A	627	638	Right-handed alpha
Helix 21	AC3	A	645	651	Right-handed alpha
Helix 22	AC4	A	663	667	Right-handed 310
Helix 23	AC5	A	673	683	Right-handed alpha
Helix 24	AC6	A	718	722	Right-handed 310
Helix 25	AC7	A	735	752	Right-handed alpha
Helix 26	AC8	A	758	764	Right-handed alpha
Helix 27	AC9	A	766	778	Right-handed alpha
Helix 28	AD1	A	790	808	Right-handed alpha
Helix 29	AD2	A	811	813	Right-handed 310
Helix 30	AD3	A	821	823	Right-handed 310
Helix 31	AD4	A	824	840	Right-handed alpha
Helix 32	AD5	A	851	855	Right-handed 310
Helix 33	AD6	A	866	869	Right-handed 310
Helix 34	AD7	A	885	888	Right-handed 310
Helix 35	AD8	A	889	896	Right-handed alpha
Helix 36	AD9	B	25	31	Right-handed alpha
Helix 37	AE1	B	34	55	Right-handed alpha
Helix 38	AE2	B	77	88	Right-handed alpha
Helix 39	AE3	B	142	160	Right-handed alpha
Helix 40	AE4	B	179	193	Right-handed alpha
Helix 41	AE5	B	219	238	Right-handed alpha
Helix 42	AE6	B	263	277	Right-handed alpha
Helix 43	AE7	B	340	350	Right-handed alpha
Helix 44	AE8	B	380	395	Right-handed alpha
Helix 45	AE9	B	406	417	Right-handed alpha
Helix 46	AF1	B	419	429	Right-handed alpha
Helix 47	AF2	B	441	446	Right-handed alpha
Helix 48	AF3	B	480	499	Right-handed alpha
Helix 49	AF4	B	530	534	Right-handed 310
Helix 50	AF5	B	537	554	Right-handed alpha
Helix 51	AF6	B	557	580	Right-handed alpha
Helix 52	AF7	B	581	585	Right-handed 310
Helix 53	AF8	B	598	615	Right-handed alpha
Helix 54	AF9	B	617	619	Right-handed 310
Helix 55	AG1	B	627	638	Right-handed alpha
Helix 56	AG2	B	645	651	Right-handed alpha
Helix 57	AG3	B	663	667	Right-handed 310
Helix 58	AG4	B	673	683	Right-handed alpha
Helix 59	AG5	B	718	722	Right-handed 310
Helix 60	AG6	B	735	752	Right-handed alpha
Helix 61	AG7	B	758	764	Right-handed alpha
Helix 62	AG8	B	766	778	Right-handed alpha
Helix 63	AG9	B	790	808	Right-handed alpha
Helix 64	AH1	B	811	813	Right-handed 310
Helix 65	AH2	B	821	823	Right-handed 310
Helix 66	AH3	B	824	840	Right-handed alpha
Helix 67	AH4	B	866	869	Right-handed 310
Helix 68	AH5	B	885	888	Right-handed 310
Helix 69	AH6	B	889	896	Right-handed alpha

There are 18 sheets in PDB entry 9JR9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	22	first strand
Strand 2	A	58	64	parallel
Strand 3	A	104	109	anti-parallel
Strand 4	A	96	101	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	134	first strand
Strand 2	A	137	140	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	292	301	parallel
Strand 3	A	304	314	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	210	211	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	195	197	first strand
Strand 2	A	292	301	parallel
Strand 3	A	304	314	anti-parallel
Strand 4	A	257	258	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	281	first strand
Strand 2	A	320	321	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	331	first strand
Strand 2	A	336	338	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	405	first strand
Strand 2	A	435	439	parallel
Strand 3	A	454	461	anti-parallel
Strand 4	A	467	473	anti-parallel
Strand 5	A	508	514	parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	641	644	first strand
Strand 2	A	621	625	parallel
Strand 3	A	658	661	parallel
Strand 4	A	699	703	parallel
Strand 5	A	588	593	parallel
Strand 6	A	725	728	parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	782	789	first strand
Strand 2	A	898	907	parallel
Strand 3	A	873	880	parallel
Strand 4	A	815	819	parallel
Strand 5	A	860	864	parallel
Strand 6	A	849	850	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	22	first strand
Strand 2	B	58	64	parallel
Strand 3	B	104	109	anti-parallel
Strand 4	B	96	101	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	134	first strand
Strand 2	B	137	140	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	292	301	parallel
Strand 3	B	304	314	anti-parallel
Strand 4	B	242	245	anti-parallel
Strand 5	B	210	211	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	195	197	first strand
Strand 2	B	292	301	parallel
Strand 3	B	304	314	anti-parallel
Strand 4	B	257	258	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	280	281	first strand
Strand 2	B	320	321	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	336	338	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	405	first strand
Strand 2	B	435	439	parallel
Strand 3	B	454	461	anti-parallel
Strand 4	B	467	473	anti-parallel
Strand 5	B	508	514	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	621	625	parallel
Strand 3	B	658	661	parallel
Strand 4	B	699	703	parallel
Strand 5	B	588	593	parallel
Strand 6	B	725	728	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	782	789	first strand
Strand 2	B	898	907	parallel
Strand 3	B	873	880	parallel
Strand 4	B	815	819	parallel
Strand 5	B	860	864	parallel
Strand 6	B	849	850	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JR9

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JR9