Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JRC entry

There are 2 chains in PDB entry 9JRC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 PRO 18TRP 613
E
 THR 333HIS 530
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9JRC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 52Right-handed alpha
Helix 2
AA2
B
55 81Right-handed alpha
Helix 3
AA3
B
82 83Right-handed 310
Helix 4
AA4
B
84 88Right-handed 310
Helix 5
AA5
B
90 102Right-handed alpha
Helix 6
AA6
B
109 116Right-handed alpha
Helix 7
AA7
B
117 130Right-handed alpha
Helix 8
AA8
B
144 155Right-handed alpha
Helix 9
AA9
B
157 172Right-handed alpha
Helix 10
AB1
B
172 194Right-handed alpha
Helix 11
AB2
B
198 204Right-handed alpha
Helix 12
AB3
B
205 208Right-handed 310
Helix 13
AB4
B
218 252Right-handed alpha
Helix 14
AB5
B
265 267Right-handed 310
Helix 15
AB6
B
274 277Right-handed 310
Helix 16
AB7
B
278 283Right-handed alpha
Helix 17
AB8
B
293 300Right-handed alpha
Helix 18
AB9
B
303 319Right-handed alpha
Helix 19
AC1
B
324 331Right-handed alpha
Helix 20
AC2
B
365 385Right-handed alpha
Helix 21
AC3
B
386 388Right-handed 310
Helix 22
AC4
B
389 393Right-handed 310
Helix 23
AC5
B
399 414Right-handed alpha
Helix 24
AC6
B
414 421Right-handed alpha
Helix 25
AC7
B
431 465Right-handed alpha
Helix 26
AC8
B
469 471Right-handed 310
Helix 27
AC9
B
472 485Right-handed alpha
Helix 28
AD1
B
498 502Right-handed 310
Helix 29
AD2
B
503 508Right-handed alpha
Helix 30
AD3
B
512 536Right-handed alpha
Helix 31
AD4
B
541 545Right-handed 310
Helix 32
AD5
B
550 562Right-handed alpha
Helix 33
AD6
B
563 567Right-handed 310
Helix 34
AD7
B
568 578Right-handed alpha
Helix 35
AD8
B
584 602Right-handed alpha
Helix 36
AD9
E
337 343Right-handed alpha
Helix 37
AE1
E
349 353Right-handed 310
Helix 38
AE2
E
365 370Right-handed alpha
Helix 39
AE3
E
384 389Right-handed 310
Helix 40
AE4
E
405 410Right-handed 310
Helix 41
AE5
E
416 422Right-handed alpha
Helix 42
AE6
E
438 443Right-handed alpha
Helix 43
AE7
E
502 505Right-handed 310
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There are 7 sheets in PDB entry 9JRC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
137 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
262 263first strand
Strand 2
B
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
356 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
395 403anti-parallel
Strand 3
E
507 514anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 380anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
361 362first strand
Strand 2
E
524 525parallel
Strand 3
E
391 392anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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