Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRD entry

There are 4 chains in PDB entry 9JRD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 22	LEU 853
B	SER 22	SER 857
C	SER 22	GLU 852
D	SER 22	ARG 859

There are116 helices in PDB entry 9JRD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	34	52	Right-handed alpha
Helix 2	AA2	A	71	85	Right-handed alpha
Helix 3	AA3	A	95	110	Right-handed alpha
Helix 4	AA4	A	148	160	Right-handed alpha
Helix 5	AA5	A	174	177	Right-handed 310
Helix 6	AA6	A	178	188	Right-handed alpha
Helix 7	AA7	A	200	212	Right-handed alpha
Helix 8	AA8	A	213	224	Right-handed alpha
Helix 9	AA9	A	232	246	Right-handed alpha
Helix 10	AB1	A	263	274	Right-handed alpha
Helix 11	AB2	A	312	316	Right-handed 310
Helix 12	AB3	A	317	340	Right-handed alpha
Helix 13	AB4	A	361	371	Right-handed alpha
Helix 14	AB5	A	465	479	Right-handed alpha
Helix 15	AB6	A	503	510	Right-handed alpha
Helix 16	AB7	A	523	528	Right-handed alpha
Helix 17	AB8	A	553	557	Right-handed 310
Helix 18	AB9	A	564	587	Right-handed alpha
Helix 19	AC1	A	604	617	Right-handed alpha
Helix 20	AC2	A	626	659	Right-handed alpha
Helix 21	AC3	A	667	674	Right-handed alpha
Helix 22	AC4	A	685	697	Right-handed alpha
Helix 23	AC5	A	704	713	Right-handed alpha
Helix 24	AC6	A	714	718	Right-handed 310
Helix 25	AC7	A	724	735	Right-handed alpha
Helix 26	AC8	A	743	753	Right-handed alpha
Helix 27	AC9	A	780	792	Right-handed alpha
Helix 28	AD1	A	795	805	Right-handed alpha
Helix 29	AD2	A	812	818	Right-handed alpha
Helix 30	AD3	A	831	853	Right-handed alpha
Helix 31	AD4	B	34	50	Right-handed alpha
Helix 32	AD5	B	71	85	Right-handed alpha
Helix 33	AD6	B	95	110	Right-handed alpha
Helix 34	AD7	B	148	160	Right-handed alpha
Helix 35	AD8	B	174	177	Right-handed 310
Helix 36	AD9	B	178	188	Right-handed alpha
Helix 37	AE1	B	200	212	Right-handed alpha
Helix 38	AE2	B	213	224	Right-handed alpha
Helix 39	AE3	B	232	246	Right-handed alpha
Helix 40	AE4	B	263	274	Right-handed alpha
Helix 41	AE5	B	312	316	Right-handed 310
Helix 42	AE6	B	317	340	Right-handed alpha
Helix 43	AE7	B	361	371	Right-handed alpha
Helix 44	AE8	B	465	479	Right-handed alpha
Helix 45	AE9	B	502	510	Right-handed alpha
Helix 46	AF1	B	523	528	Right-handed alpha
Helix 47	AF2	B	553	559	Right-handed 310
Helix 48	AF3	B	562	588	Right-handed alpha
Helix 49	AF4	B	628	658	Right-handed alpha
Helix 50	AF5	B	667	674	Right-handed alpha
Helix 51	AF6	B	685	697	Right-handed alpha
Helix 52	AF7	B	702	713	Right-handed alpha
Helix 53	AF8	B	714	718	Right-handed 310
Helix 54	AF9	B	724	735	Right-handed alpha
Helix 55	AG1	B	743	753	Right-handed alpha
Helix 56	AG2	B	780	794	Right-handed alpha
Helix 57	AG3	B	795	802	Right-handed alpha
Helix 58	AG4	B	812	818	Right-handed alpha
Helix 59	AG5	B	827	857	Right-handed alpha
Helix 60	AG6	C	34	52	Right-handed alpha
Helix 61	AG7	C	71	85	Right-handed alpha
Helix 62	AG8	C	95	110	Right-handed alpha
Helix 63	AG9	C	148	160	Right-handed alpha
Helix 64	AH1	C	174	177	Right-handed 310
Helix 65	AH2	C	178	188	Right-handed alpha
Helix 66	AH3	C	200	212	Right-handed alpha
Helix 67	AH4	C	213	224	Right-handed alpha
Helix 68	AH5	C	232	246	Right-handed alpha
Helix 69	AH6	C	263	274	Right-handed alpha
Helix 70	AH7	C	312	316	Right-handed 310
Helix 71	AH8	C	317	340	Right-handed alpha
Helix 72	AH9	C	361	371	Right-handed alpha
Helix 73	AI1	C	465	479	Right-handed alpha
Helix 74	AI2	C	503	510	Right-handed alpha
Helix 75	AI3	C	523	530	Right-handed alpha
Helix 76	AI4	C	553	557	Right-handed 310
Helix 77	AI5	C	562	589	Right-handed alpha
Helix 78	AI6	C	604	617	Right-handed alpha
Helix 79	AI7	C	627	660	Right-handed alpha
Helix 80	AI8	C	668	674	Right-handed alpha
Helix 81	AI9	C	685	696	Right-handed alpha
Helix 82	AJ1	C	703	713	Right-handed alpha
Helix 83	AJ2	C	718	722	Right-handed 310
Helix 84	AJ3	C	724	732	Right-handed alpha
Helix 85	AJ4	C	743	753	Right-handed alpha
Helix 86	AJ5	C	780	795	Right-handed alpha
Helix 87	AJ6	C	795	805	Right-handed alpha
Helix 88	AJ7	C	813	818	Right-handed alpha
Helix 89	AJ8	C	827	852	Right-handed alpha
Helix 90	AJ9	D	34	50	Right-handed alpha
Helix 91	AK1	D	71	85	Right-handed alpha
Helix 92	AK2	D	95	110	Right-handed alpha
Helix 93	AK3	D	148	160	Right-handed alpha
Helix 94	AK4	D	174	177	Right-handed 310
Helix 95	AK5	D	178	188	Right-handed alpha
Helix 96	AK6	D	200	212	Right-handed alpha
Helix 97	AK7	D	213	224	Right-handed alpha
Helix 98	AK8	D	232	246	Right-handed alpha
Helix 99	AK9	D	263	274	Right-handed alpha
Helix 100	AL1	D	312	316	Right-handed 310
Helix 101	AL2	D	317	340	Right-handed alpha
Helix 102	AL3	D	361	371	Right-handed alpha
Helix 103	AL4	D	465	478	Right-handed alpha
Helix 104	AL5	D	503	511	Right-handed alpha
Helix 105	AL6	D	523	530	Right-handed alpha
Helix 106	AL7	D	555	559	Right-handed 310
Helix 107	AL8	D	562	589	Right-handed alpha
Helix 108	AL9	D	629	658	Right-handed alpha
Helix 109	AM1	D	667	674	Right-handed alpha
Helix 110	AM2	D	685	697	Right-handed alpha
Helix 111	AM3	D	703	713	Right-handed alpha
Helix 112	AM4	D	724	735	Right-handed alpha
Helix 113	AM5	D	743	752	Right-handed alpha
Helix 114	AM6	D	780	795	Right-handed alpha
Helix 115	AM7	D	795	805	Right-handed alpha
Helix 116	AM8	D	831	859	Right-handed alpha

There are 34 sheets in PDB entry 9JRD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	67	first strand
Strand 2	A	23	31	parallel
Strand 3	A	90	93	parallel
Strand 4	A	113	115	parallel
Strand 5	A	140	142	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	196	first strand
Strand 2	A	164	169	parallel
Strand 3	A	226	230	parallel
Strand 4	A	254	258	parallel
Strand 5	A	277	283	parallel
Strand 6	A	393	402	anti-parallel
Strand 7	A	406	416	anti-parallel
Strand 8	A	420	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	295	296	first strand
Strand 2	A	299	300	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	379	382	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	438	442	parallel
Strand 3	A	515	521	parallel
Strand 4	A	768	774	anti-parallel
Strand 5	A	531	532	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	483	first strand
Strand 2	A	438	442	parallel
Strand 3	A	515	521	parallel
Strand 4	A	768	774	anti-parallel
Strand 5	A	538	539	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	462	464	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	501	502	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	680	first strand
Strand 2	A	738	742	parallel
Strand 3	A	541	546	anti-parallel
Strand 4	A	758	761	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	67	first strand
Strand 2	B	24	31	parallel
Strand 3	B	90	94	parallel
Strand 4	B	113	117	parallel
Strand 5	B	140	142	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	197	first strand
Strand 2	B	164	170	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	258	parallel
Strand 5	B	277	283	parallel
Strand 6	B	393	398	anti-parallel
Strand 7	B	410	416	anti-parallel
Strand 8	B	420	423	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	376	first strand
Strand 2	B	379	382	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	481	483	first strand
Strand 2	B	438	442	parallel
Strand 3	B	515	516	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	451	452	first strand
Strand 2	B	463	464	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	495	496	first strand
Strand 2	B	500	501	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	768	769	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	681	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	546	anti-parallel
Strand 4	B	758	761	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	67	first strand
Strand 2	C	23	31	parallel
Strand 3	C	90	93	parallel
Strand 4	C	113	115	parallel
Strand 5	C	140	142	parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	164	169	parallel
Strand 3	C	226	230	parallel
Strand 4	C	254	258	parallel
Strand 5	C	277	283	parallel
Strand 6	C	393	402	anti-parallel
Strand 7	C	406	416	anti-parallel
Strand 8	C	420	422	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	299	300	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	376	first strand
Strand 2	C	379	382	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	486	first strand
Strand 2	C	438	443	parallel
Strand 3	C	515	521	parallel
Strand 4	C	768	774	anti-parallel
Strand 5	C	531	532	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	486	first strand
Strand 2	C	438	443	parallel
Strand 3	C	515	521	parallel
Strand 4	C	768	774	anti-parallel
Strand 5	C	538	539	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	452	first strand
Strand 2	C	463	464	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	496	first strand
Strand 2	C	500	502	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	680	first strand
Strand 2	C	737	742	parallel
Strand 3	C	541	546	anti-parallel
Strand 4	C	758	760	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	67	first strand
Strand 2	D	24	31	parallel
Strand 3	D	90	94	parallel
Strand 4	D	113	117	parallel
Strand 5	D	140	142	parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	197	first strand
Strand 2	D	164	170	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	258	parallel
Strand 5	D	277	283	parallel
Strand 6	D	393	398	anti-parallel
Strand 7	D	410	416	anti-parallel
Strand 8	D	420	423	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	376	first strand
Strand 2	D	379	382	anti-parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	483	486	first strand
Strand 2	D	440	443	parallel
Strand 3	D	515	516	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	453	first strand
Strand 2	D	462	464	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	531	532	first strand
Strand 2	D	773	774	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	538	539	first strand
Strand 2	D	768	769	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	679	681	first strand
Strand 2	D	738	742	parallel
Strand 3	D	541	546	anti-parallel
Strand 4	D	758	761	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRD

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRD