Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRF entry

There are 4 chains in PDB entry 9JRF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	SER 22	SER 857
C	SER 22	ASN 856
D	SER 22	GLU 852
A	SER 22	ASN 856

There are112 helices in PDB entry 9JRF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	34	52	Right-handed alpha
Helix 2	AA2	B	71	85	Right-handed alpha
Helix 3	AA3	B	95	110	Right-handed alpha
Helix 4	AA4	B	148	160	Right-handed alpha
Helix 5	AA5	B	174	177	Right-handed 310
Helix 6	AA6	B	178	188	Right-handed alpha
Helix 7	AA7	B	200	212	Right-handed alpha
Helix 8	AA8	B	213	224	Right-handed alpha
Helix 9	AA9	B	232	246	Right-handed alpha
Helix 10	AB1	B	263	274	Right-handed alpha
Helix 11	AB2	B	312	316	Right-handed 310
Helix 12	AB3	B	317	340	Right-handed alpha
Helix 13	AB4	B	361	371	Right-handed alpha
Helix 14	AB5	B	465	479	Right-handed alpha
Helix 15	AB6	B	502	509	Right-handed alpha
Helix 16	AB7	B	523	530	Right-handed alpha
Helix 17	AB8	B	562	588	Right-handed alpha
Helix 18	AB9	B	627	661	Right-handed alpha
Helix 19	AC1	B	685	694	Right-handed alpha
Helix 20	AC2	B	703	713	Right-handed alpha
Helix 21	AC3	B	714	717	Right-handed 310
Helix 22	AC4	B	727	732	Right-handed alpha
Helix 23	AC5	B	743	753	Right-handed alpha
Helix 24	AC6	B	778	795	Right-handed alpha
Helix 25	AC7	B	796	805	Right-handed alpha
Helix 26	AC8	B	812	818	Right-handed alpha
Helix 27	AC9	B	831	857	Right-handed alpha
Helix 28	AD1	C	34	52	Right-handed alpha
Helix 29	AD2	C	71	85	Right-handed alpha
Helix 30	AD3	C	95	110	Right-handed alpha
Helix 31	AD4	C	148	160	Right-handed alpha
Helix 32	AD5	C	174	177	Right-handed 310
Helix 33	AD6	C	178	188	Right-handed alpha
Helix 34	AD7	C	200	212	Right-handed alpha
Helix 35	AD8	C	213	224	Right-handed alpha
Helix 36	AD9	C	232	246	Right-handed alpha
Helix 37	AE1	C	263	274	Right-handed alpha
Helix 38	AE2	C	312	316	Right-handed 310
Helix 39	AE3	C	317	340	Right-handed alpha
Helix 40	AE4	C	361	371	Right-handed alpha
Helix 41	AE5	C	466	479	Right-handed alpha
Helix 42	AE6	C	506	511	Right-handed alpha
Helix 43	AE7	C	523	530	Right-handed alpha
Helix 44	AE8	C	562	589	Right-handed alpha
Helix 45	AE9	C	627	659	Right-handed alpha
Helix 46	AF1	C	660	662	Right-handed 310
Helix 47	AF2	C	667	673	Right-handed alpha
Helix 48	AF3	C	685	695	Right-handed alpha
Helix 49	AF4	C	703	713	Right-handed alpha
Helix 50	AF5	C	724	732	Right-handed alpha
Helix 51	AF6	C	743	753	Right-handed alpha
Helix 52	AF7	C	779	795	Right-handed alpha
Helix 53	AF8	C	796	805	Right-handed alpha
Helix 54	AF9	C	827	856	Right-handed alpha
Helix 55	AG1	D	34	50	Right-handed alpha
Helix 56	AG2	D	71	85	Right-handed alpha
Helix 57	AG3	D	95	110	Right-handed alpha
Helix 58	AG4	D	148	160	Right-handed alpha
Helix 59	AG5	D	174	177	Right-handed 310
Helix 60	AG6	D	178	188	Right-handed alpha
Helix 61	AG7	D	200	212	Right-handed alpha
Helix 62	AG8	D	213	224	Right-handed alpha
Helix 63	AG9	D	232	246	Right-handed alpha
Helix 64	AH1	D	263	274	Right-handed alpha
Helix 65	AH2	D	312	316	Right-handed 310
Helix 66	AH3	D	317	340	Right-handed alpha
Helix 67	AH4	D	361	371	Right-handed alpha
Helix 68	AH5	D	466	469	Right-handed 310
Helix 69	AH6	D	470	479	Right-handed alpha
Helix 70	AH7	D	502	510	Right-handed alpha
Helix 71	AH8	D	523	528	Right-handed alpha
Helix 72	AH9	D	554	558	Right-handed 310
Helix 73	AI1	D	562	587	Right-handed alpha
Helix 74	AI2	D	627	660	Right-handed alpha
Helix 75	AI3	D	668	672	Right-handed 310
Helix 76	AI4	D	685	697	Right-handed alpha
Helix 77	AI5	D	702	708	Right-handed alpha
Helix 78	AI6	D	708	713	Right-handed alpha
Helix 79	AI7	D	724	734	Right-handed alpha
Helix 80	AI8	D	743	753	Right-handed alpha
Helix 81	AI9	D	779	795	Right-handed alpha
Helix 82	AJ1	D	795	805	Right-handed alpha
Helix 83	AJ2	D	828	830	Right-handed 310
Helix 84	AJ3	D	831	852	Right-handed alpha
Helix 85	AJ4	A	34	50	Right-handed alpha
Helix 86	AJ5	A	71	85	Right-handed alpha
Helix 87	AJ6	A	95	110	Right-handed alpha
Helix 88	AJ7	A	148	160	Right-handed alpha
Helix 89	AJ8	A	174	177	Right-handed 310
Helix 90	AJ9	A	178	188	Right-handed alpha
Helix 91	AK1	A	200	212	Right-handed alpha
Helix 92	AK2	A	213	224	Right-handed alpha
Helix 93	AK3	A	232	246	Right-handed alpha
Helix 94	AK4	A	263	274	Right-handed alpha
Helix 95	AK5	A	312	316	Right-handed 310
Helix 96	AK6	A	317	340	Right-handed alpha
Helix 97	AK7	A	361	371	Right-handed alpha
Helix 98	AK8	A	466	479	Right-handed alpha
Helix 99	AK9	A	504	510	Right-handed alpha
Helix 100	AL1	A	553	558	Right-handed 310
Helix 101	AL2	A	562	587	Right-handed alpha
Helix 102	AL3	A	627	659	Right-handed alpha
Helix 103	AL4	A	669	674	Right-handed alpha
Helix 104	AL5	A	685	697	Right-handed alpha
Helix 105	AL6	A	703	713	Right-handed alpha
Helix 106	AL7	A	714	718	Right-handed 310
Helix 107	AL8	A	724	735	Right-handed alpha
Helix 108	AL9	A	742	753	Right-handed alpha
Helix 109	AM1	A	780	795	Right-handed alpha
Helix 110	AM2	A	796	805	Right-handed alpha
Helix 111	AM3	A	812	817	Right-handed alpha
Helix 112	AM4	A	827	856	Right-handed alpha

There are 25 sheets in PDB entry 9JRF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	67	first strand
Strand 2	B	23	31	parallel
Strand 3	B	90	93	parallel
Strand 4	B	113	115	parallel
Strand 5	B	140	142	parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	196	first strand
Strand 2	B	164	169	parallel
Strand 3	B	226	230	parallel
Strand 4	B	254	258	parallel
Strand 5	B	277	283	parallel
Strand 6	B	393	402	anti-parallel
Strand 7	B	406	416	anti-parallel
Strand 8	B	420	422	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	295	296	first strand
Strand 2	B	299	300	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	376	first strand
Strand 2	B	379	382	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	486	first strand
Strand 2	B	440	443	parallel
Strand 3	B	515	516	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	742	first strand
Strand 2	B	541	546	anti-parallel
Strand 3	B	758	763	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	67	first strand
Strand 2	C	23	31	parallel
Strand 3	C	90	93	parallel
Strand 4	C	113	115	parallel
Strand 5	C	140	142	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	191	196	first strand
Strand 2	C	164	169	parallel
Strand 3	C	226	230	parallel
Strand 4	C	254	258	parallel
Strand 5	C	277	283	parallel
Strand 6	C	393	402	anti-parallel
Strand 7	C	406	416	anti-parallel
Strand 8	C	420	422	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	295	296	first strand
Strand 2	C	299	300	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	376	first strand
Strand 2	C	379	382	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	443	first strand
Strand 2	C	483	486	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	452	first strand
Strand 2	C	463	465	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	739	742	first strand
Strand 2	C	541	545	anti-parallel
Strand 3	C	759	761	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	681	682	first strand
Strand 2	C	721	722	parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	60	67	first strand
Strand 2	D	24	31	parallel
Strand 3	D	90	94	parallel
Strand 4	D	113	117	parallel
Strand 5	D	140	142	parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	191	197	first strand
Strand 2	D	164	170	parallel
Strand 3	D	226	230	parallel
Strand 4	D	254	258	parallel
Strand 5	D	277	283	parallel
Strand 6	D	393	398	anti-parallel
Strand 7	D	410	416	anti-parallel
Strand 8	D	420	423	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	373	376	first strand
Strand 2	D	379	382	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	538	first strand
Strand 2	D	769	770	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	680	first strand
Strand 2	D	737	742	parallel
Strand 3	D	541	546	anti-parallel
Strand 4	D	758	760	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	67	first strand
Strand 2	A	24	31	parallel
Strand 3	A	90	94	parallel
Strand 4	A	113	117	parallel
Strand 5	A	140	142	parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	191	197	first strand
Strand 2	A	164	170	parallel
Strand 3	A	226	230	parallel
Strand 4	A	254	258	parallel
Strand 5	A	277	283	parallel
Strand 6	A	393	398	anti-parallel
Strand 7	A	410	416	anti-parallel
Strand 8	A	420	423	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	379	382	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	442	443	first strand
Strand 2	A	485	486	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	451	first strand
Strand 2	A	464	465	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	544	546	first strand
Strand 2	A	758	760	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRF

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRF