Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRG entry

There are 4 chains in PDB entry 9JRG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 431	LEU 854
B	MET 430	SER 857
C	MET 430	GLU 852
D	MET 430	ARG 859

There are 66 helices in PDB entry 9JRG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	467	480	Right-handed alpha
Helix 2	AA2	A	504	511	Right-handed alpha
Helix 3	AA3	A	524	529	Right-handed alpha
Helix 4	AA4	A	563	588	Right-handed alpha
Helix 5	AA5	A	605	618	Right-handed alpha
Helix 6	AA6	A	628	662	Right-handed alpha
Helix 7	AA7	A	668	675	Right-handed alpha
Helix 8	AA8	A	689	696	Right-handed alpha
Helix 9	AA9	A	705	714	Right-handed alpha
Helix 10	AB1	A	715	718	Right-handed 310
Helix 11	AB2	A	725	734	Right-handed alpha
Helix 12	AB3	A	744	754	Right-handed alpha
Helix 13	AB4	A	780	795	Right-handed alpha
Helix 14	AB5	A	796	806	Right-handed alpha
Helix 15	AB6	A	813	819	Right-handed alpha
Helix 16	AB7	A	832	853	Right-handed alpha
Helix 17	AB8	B	432	437	Right-handed alpha
Helix 18	AB9	B	465	479	Right-handed alpha
Helix 19	AC1	B	496	500	Right-handed 310
Helix 20	AC2	B	502	510	Right-handed alpha
Helix 21	AC3	B	523	530	Right-handed alpha
Helix 22	AC4	B	562	588	Right-handed alpha
Helix 23	AC5	B	605	617	Right-handed alpha
Helix 24	AC6	B	627	658	Right-handed alpha
Helix 25	AC7	B	667	674	Right-handed alpha
Helix 26	AC8	B	685	696	Right-handed alpha
Helix 27	AC9	B	702	713	Right-handed alpha
Helix 28	AD1	B	724	735	Right-handed alpha
Helix 29	AD2	B	743	753	Right-handed alpha
Helix 30	AD3	B	780	795	Right-handed alpha
Helix 31	AD4	B	795	805	Right-handed alpha
Helix 32	AD5	B	812	818	Right-handed alpha
Helix 33	AD6	B	827	854	Right-handed alpha
Helix 34	AD7	C	431	435	Right-handed alpha
Helix 35	AD8	C	466	479	Right-handed alpha
Helix 36	AD9	C	503	510	Right-handed alpha
Helix 37	AE1	C	523	528	Right-handed alpha
Helix 38	AE2	C	555	559	Right-handed 310
Helix 39	AE3	C	562	588	Right-handed alpha
Helix 40	AE4	C	604	617	Right-handed alpha
Helix 41	AE5	C	627	662	Right-handed alpha
Helix 42	AE6	C	667	674	Right-handed alpha
Helix 43	AE7	C	685	696	Right-handed alpha
Helix 44	AE8	C	703	713	Right-handed alpha
Helix 45	AE9	C	724	734	Right-handed alpha
Helix 46	AF1	C	743	752	Right-handed alpha
Helix 47	AF2	C	780	795	Right-handed alpha
Helix 48	AF3	C	795	805	Right-handed alpha
Helix 49	AF4	C	813	818	Right-handed alpha
Helix 50	AF5	C	832	844	Right-handed alpha
Helix 51	AF6	C	844	851	Right-handed alpha
Helix 52	AF7	D	465	478	Right-handed alpha
Helix 53	AF8	D	502	510	Right-handed alpha
Helix 54	AF9	D	523	530	Right-handed alpha
Helix 55	AG1	D	555	559	Right-handed 310
Helix 56	AG2	D	562	588	Right-handed alpha
Helix 57	AG3	D	605	617	Right-handed alpha
Helix 58	AG4	D	627	657	Right-handed alpha
Helix 59	AG5	D	667	674	Right-handed alpha
Helix 60	AG6	D	685	696	Right-handed alpha
Helix 61	AG7	D	703	713	Right-handed alpha
Helix 62	AG8	D	724	735	Right-handed alpha
Helix 63	AG9	D	743	751	Right-handed alpha
Helix 64	AH1	D	780	794	Right-handed alpha
Helix 65	AH2	D	795	805	Right-handed alpha
Helix 66	AH3	D	831	859	Right-handed alpha

There are 17 sheets in PDB entry 9JRG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	481	487	first strand
Strand 2	A	438	444	parallel
Strand 3	A	516	522	parallel
Strand 4	A	771	775	anti-parallel
Strand 5	A	532	536	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	451	453	first strand
Strand 2	A	464	466	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	495	496	first strand
Strand 2	A	502	503	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	680	681	first strand
Strand 2	A	739	743	parallel
Strand 3	A	542	547	anti-parallel
Strand 4	A	759	762	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	438	443	first strand
Strand 2	B	481	486	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	521	first strand
Strand 2	B	768	774	anti-parallel
Strand 3	B	538	539	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	546	anti-parallel
Strand 4	B	758	761	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	486	first strand
Strand 2	C	437	443	parallel
Strand 3	C	515	516	parallel
Strand 4	C	773	774	anti-parallel
Strand 5	C	531	532	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	452	first strand
Strand 2	C	463	465	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	537	539	first strand
Strand 2	C	768	770	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	679	680	first strand
Strand 2	C	738	742	parallel
Strand 3	C	541	546	anti-parallel
Strand 4	C	758	760	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	482	486	first strand
Strand 2	D	439	443	parallel
Strand 3	D	515	516	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	451	456	first strand
Strand 2	D	461	464	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	539	first strand
Strand 2	D	768	770	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	741	742	first strand
Strand 2	D	541	545	anti-parallel
Strand 3	D	759	761	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	820	821	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	680	first strand
Strand 2	D	737	739	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRG

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRG