Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRH entry

There are 4 chains in PDB entry 9JRH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 430	ASN 856
B	MET 430	SER 857
C	MET 430	ASN 856
D	ARG 433	GLU 852

There are 74 helices in PDB entry 9JRH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	502	510	Right-handed alpha
Helix 2	AA2	A	525	528	Right-handed 310
Helix 3	AA3	A	565	587	Right-handed alpha
Helix 4	AA4	A	610	615	Right-handed alpha
Helix 5	AA5	A	627	645	Right-handed alpha
Helix 6	AA6	A	647	662	Right-handed alpha
Helix 7	AA7	A	670	674	Right-handed 310
Helix 8	AA8	A	685	696	Right-handed alpha
Helix 9	AA9	A	702	712	Right-handed alpha
Helix 10	AB1	A	713	717	Right-handed 310
Helix 11	AB2	A	724	735	Right-handed alpha
Helix 12	AB3	A	743	752	Right-handed alpha
Helix 13	AB4	A	780	785	Right-handed alpha
Helix 14	AB5	A	795	801	Right-handed alpha
Helix 15	AB6	A	802	804	Right-handed 310
Helix 16	AB7	A	812	817	Right-handed alpha
Helix 17	AB8	A	827	832	Right-handed 310
Helix 18	AB9	A	833	856	Right-handed alpha
Helix 19	AC1	B	465	476	Right-handed alpha
Helix 20	AC2	B	502	510	Right-handed alpha
Helix 21	AC3	B	554	559	Right-handed alpha
Helix 22	AC4	B	564	587	Right-handed alpha
Helix 23	AC5	B	605	615	Right-handed alpha
Helix 24	AC6	B	627	634	Right-handed alpha
Helix 25	AC7	B	634	645	Right-handed alpha
Helix 26	AC8	B	647	662	Right-handed alpha
Helix 27	AC9	B	663	668	Right-handed 310
Helix 28	AD1	B	685	697	Right-handed alpha
Helix 29	AD2	B	704	708	Right-handed 310
Helix 30	AD3	B	727	732	Right-handed alpha
Helix 31	AD4	B	743	753	Right-handed alpha
Helix 32	AD5	B	780	794	Right-handed alpha
Helix 33	AD6	B	796	805	Right-handed alpha
Helix 34	AD7	B	811	815	Right-handed 310
Helix 35	AD8	B	827	831	Right-handed 310
Helix 36	AD9	B	834	851	Right-handed alpha
Helix 37	AE1	B	851	857	Right-handed alpha
Helix 38	AE2	C	454	457	Right-handed 310
Helix 39	AE3	C	503	511	Right-handed alpha
Helix 40	AE4	C	523	527	Right-handed 310
Helix 41	AE5	C	564	587	Right-handed alpha
Helix 42	AE6	C	605	609	Right-handed alpha
Helix 43	AE7	C	610	615	Right-handed alpha
Helix 44	AE8	C	627	632	Right-handed alpha
Helix 45	AE9	C	633	635	Right-handed 310
Helix 46	AF1	C	636	659	Right-handed alpha
Helix 47	AF2	C	685	695	Right-handed alpha
Helix 48	AF3	C	702	713	Right-handed alpha
Helix 49	AF4	C	724	733	Right-handed alpha
Helix 50	AF5	C	743	753	Right-handed alpha
Helix 51	AF6	C	799	804	Right-handed 310
Helix 52	AF7	C	833	850	Right-handed alpha
Helix 53	AF8	C	850	856	Right-handed alpha
Helix 54	AF9	D	465	476	Right-handed alpha
Helix 55	AG1	D	503	510	Right-handed alpha
Helix 56	AG2	D	523	528	Right-handed alpha
Helix 57	AG3	D	564	586	Right-handed alpha
Helix 58	AG4	D	605	615	Right-handed alpha
Helix 59	AG5	D	629	634	Right-handed alpha
Helix 60	AG6	D	634	645	Right-handed alpha
Helix 61	AG7	D	647	659	Right-handed alpha
Helix 62	AG8	D	667	675	Right-handed alpha
Helix 63	AG9	D	685	695	Right-handed alpha
Helix 64	AH1	D	703	714	Right-handed alpha
Helix 65	AH2	D	718	722	Right-handed 310
Helix 66	AH3	D	726	731	Right-handed alpha
Helix 67	AH4	D	742	747	Right-handed alpha
Helix 68	AH5	D	747	753	Right-handed alpha
Helix 69	AH6	D	779	793	Right-handed alpha
Helix 70	AH7	D	795	801	Right-handed alpha
Helix 71	AH8	D	802	804	Right-handed 310
Helix 72	AH9	D	812	818	Right-handed 310
Helix 73	AI1	D	827	830	Right-handed 310
Helix 74	AI2	D	831	849	Right-handed alpha

There are 14 sheets in PDB entry 9JRH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	532	first strand
Strand 2	A	773	775	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	739	742	first strand
Strand 2	A	541	546	anti-parallel
Strand 3	A	758	761	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	435	437	first strand
Strand 2	B	479	480	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	443	first strand
Strand 2	B	484	486	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	521	522	first strand
Strand 2	B	769	770	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	531	532	first strand
Strand 2	B	773	774	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	680	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	546	anti-parallel
Strand 4	B	758	761	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	432	435	first strand
Strand 2	C	482	484	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	450	452	first strand
Strand 2	C	463	465	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	521	first strand
Strand 2	C	770	771	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	739	742	first strand
Strand 2	C	541	546	anti-parallel
Strand 3	C	758	761	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	442	first strand
Strand 2	D	515	522	parallel
Strand 3	D	769	774	anti-parallel
Strand 4	D	537	538	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	758	763	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	679	first strand
Strand 2	D	737	738	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRH

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRH