Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRJ entry

There are 4 chains in PDB entry 9JRJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 430	ASN 856
B	MET 430	SER 857
C	MET 430	LEU 853
D	MET 430	SER 857

There are 68 helices in PDB entry 9JRJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	465	475	Right-handed alpha
Helix 2	AA2	A	504	509	Right-handed alpha
Helix 3	AA3	A	523	528	Right-handed alpha
Helix 4	AA4	A	562	587	Right-handed alpha
Helix 5	AA5	A	605	617	Right-handed alpha
Helix 6	AA6	A	627	662	Right-handed alpha
Helix 7	AA7	A	668	674	Right-handed alpha
Helix 8	AA8	A	685	697	Right-handed alpha
Helix 9	AA9	A	702	713	Right-handed alpha
Helix 10	AB1	A	714	718	Right-handed 310
Helix 11	AB2	A	724	733	Right-handed alpha
Helix 12	AB3	A	743	753	Right-handed alpha
Helix 13	AB4	A	780	787	Right-handed alpha
Helix 14	AB5	A	797	805	Right-handed alpha
Helix 15	AB6	A	812	817	Right-handed alpha
Helix 16	AB7	A	831	856	Right-handed alpha
Helix 17	AB8	B	466	475	Right-handed alpha
Helix 18	AB9	B	503	510	Right-handed alpha
Helix 19	AC1	B	523	530	Right-handed alpha
Helix 20	AC2	B	554	559	Right-handed alpha
Helix 21	AC3	B	562	587	Right-handed alpha
Helix 22	AC4	B	605	611	Right-handed alpha
Helix 23	AC5	B	612	617	Right-handed alpha
Helix 24	AC6	B	627	662	Right-handed alpha
Helix 25	AC7	B	664	668	Right-handed 310
Helix 26	AC8	B	685	695	Right-handed alpha
Helix 27	AC9	B	703	712	Right-handed alpha
Helix 28	AD1	B	727	735	Right-handed alpha
Helix 29	AD2	B	743	751	Right-handed alpha
Helix 30	AD3	B	779	795	Right-handed alpha
Helix 31	AD4	B	795	802	Right-handed alpha
Helix 32	AD5	B	813	818	Right-handed 310
Helix 33	AD6	B	827	856	Right-handed alpha
Helix 34	AD7	C	465	479	Right-handed alpha
Helix 35	AD8	C	502	510	Right-handed alpha
Helix 36	AD9	C	523	530	Right-handed alpha
Helix 37	AE1	C	562	587	Right-handed alpha
Helix 38	AE2	C	604	617	Right-handed alpha
Helix 39	AE3	C	627	662	Right-handed alpha
Helix 40	AE4	C	667	674	Right-handed alpha
Helix 41	AE5	C	688	695	Right-handed alpha
Helix 42	AE6	C	704	712	Right-handed alpha
Helix 43	AE7	C	714	718	Right-handed 310
Helix 44	AE8	C	724	733	Right-handed alpha
Helix 45	AE9	C	743	752	Right-handed alpha
Helix 46	AF1	C	780	794	Right-handed alpha
Helix 47	AF2	C	795	805	Right-handed alpha
Helix 48	AF3	C	813	818	Right-handed alpha
Helix 49	AF4	C	823	826	Right-handed 310
Helix 50	AF5	C	827	852	Right-handed alpha
Helix 51	AF6	D	431	436	Right-handed alpha
Helix 52	AF7	D	465	479	Right-handed alpha
Helix 53	AF8	D	497	499	Right-handed 310
Helix 54	AF9	D	502	510	Right-handed alpha
Helix 55	AG1	D	523	528	Right-handed alpha
Helix 56	AG2	D	553	559	Right-handed 310
Helix 57	AG3	D	562	588	Right-handed alpha
Helix 58	AG4	D	606	617	Right-handed alpha
Helix 59	AG5	D	627	657	Right-handed alpha
Helix 60	AG6	D	667	674	Right-handed alpha
Helix 61	AG7	D	685	696	Right-handed alpha
Helix 62	AG8	D	702	714	Right-handed alpha
Helix 63	AG9	D	724	733	Right-handed alpha
Helix 64	AH1	D	743	752	Right-handed alpha
Helix 65	AH2	D	780	795	Right-handed alpha
Helix 66	AH3	D	795	805	Right-handed alpha
Helix 67	AH4	D	812	818	Right-handed alpha
Helix 68	AH5	D	827	857	Right-handed alpha

There are 15 sheets in PDB entry 9JRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	441	443	first strand
Strand 2	A	486	488	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	530	531	first strand
Strand 2	A	774	775	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	538	first strand
Strand 2	A	769	771	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	678	680	first strand
Strand 2	A	737	742	parallel
Strand 3	A	541	546	anti-parallel
Strand 4	A	758	761	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	483	486	first strand
Strand 2	B	440	443	parallel
Strand 3	B	515	516	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	450	first strand
Strand 2	B	464	465	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	679	681	first strand
Strand 2	B	738	742	parallel
Strand 3	B	541	546	anti-parallel
Strand 4	B	758	761	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	481	486	first strand
Strand 2	C	438	443	parallel
Strand 3	C	515	516	parallel
Strand 4	C	773	774	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	678	680	first strand
Strand 2	C	737	742	parallel
Strand 3	C	541	546	anti-parallel
Strand 4	C	758	761	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	438	443	first strand
Strand 2	D	481	486	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	495	496	first strand
Strand 2	D	500	501	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	515	516	first strand
Strand 2	D	773	774	anti-parallel
Strand 3	D	531	532	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	537	539	first strand
Strand 2	D	768	770	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	678	680	first strand
Strand 2	D	737	742	parallel
Strand 3	D	541	546	anti-parallel
Strand 4	D	758	761	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	658	659	first strand
Strand 2	D	820	821	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRJ