Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JRY entry

There are 2 chains in PDB entry 9JRY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	CYS 17	VAL 509
B	ASN 16	LYS 512

There are 37 helices in PDB entry 9JRY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	50	56	Right-handed alpha
Helix 2	AA2	A	58	63	Right-handed alpha
Helix 3	AA3	A	66	70	Right-handed 310
Helix 4	AA4	A	72	85	Right-handed alpha
Helix 5	AA5	A	87	92	Right-handed 310
Helix 6	AA6	A	137	149	Right-handed alpha
Helix 7	AA7	A	152	169	Right-handed alpha
Helix 8	AA8	A	204	208	Right-handed 310
Helix 9	AA9	A	209	219	Right-handed alpha
Helix 10	AB1	A	257	268	Right-handed alpha
Helix 11	AB2	A	298	342	Right-handed alpha
Helix 12	AB3	A	350	354	Right-handed alpha
Helix 13	AB4	A	358	363	Right-handed alpha
Helix 14	AB5	A	384	398	Right-handed alpha
Helix 15	AB6	A	408	412	Right-handed 310
Helix 16	AB7	A	413	418	Right-handed 310
Helix 17	AB8	A	419	424	Right-handed alpha
Helix 18	AB9	A	491	508	Right-handed alpha
Helix 19	AC1	B	16	20	Right-handed 310
Helix 20	AC2	B	50	56	Right-handed alpha
Helix 21	AC3	B	58	63	Right-handed 310
Helix 22	AC4	B	68	70	Right-handed 310
Helix 23	AC5	B	72	84	Right-handed alpha
Helix 24	AC6	B	87	92	Right-handed 310
Helix 25	AC7	B	133	149	Right-handed alpha
Helix 26	AC8	B	152	169	Right-handed alpha
Helix 27	AC9	B	204	208	Right-handed 310
Helix 28	AD1	B	209	219	Right-handed alpha
Helix 29	AD2	B	247	251	Right-handed 310
Helix 30	AD3	B	257	268	Right-handed alpha
Helix 31	AD4	B	298	343	Right-handed alpha
Helix 32	AD5	B	347	354	Right-handed alpha
Helix 33	AD6	B	359	364	Right-handed alpha
Helix 34	AD7	B	386	399	Right-handed alpha
Helix 35	AD8	B	408	412	Right-handed 310
Helix 36	AD9	B	413	420	Right-handed 310
Helix 37	AE1	B	491	512	Right-handed alpha

There are 9 sheets in PDB entry 9JRY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	28	first strand
Strand 2	A	232	233	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	47	first strand
Strand 2	A	33	37	anti-parallel
Strand 3	A	118	124	anti-parallel
Strand 4	A	105	113	anti-parallel
Strand 5	A	94	98	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	224	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	282	291	anti-parallel
Strand 4	A	172	177	anti-parallel
Strand 5	A	184	191	anti-parallel
Strand 6	A	201	203	anti-parallel
Strand 7	A	448	452	parallel
Strand 8	A	479	483	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	380	first strand
Strand 2	A	367	372	anti-parallel
Strand 3	A	437	443	anti-parallel
Strand 4	A	425	432	anti-parallel
Strand 5	A	403	406	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	65	66	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	28	first strand
Strand 2	B	232	235	anti-parallel
Strand 3	B	43	48	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	118	124	anti-parallel
Strand 6	B	107	113	anti-parallel
Strand 7	B	94	95	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	184	191	anti-parallel
Strand 3	B	172	178	anti-parallel
Strand 4	B	282	291	anti-parallel
Strand 5	B	271	279	anti-parallel
Strand 6	B	221	224	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	378	380	first strand
Strand 2	B	367	371	anti-parallel
Strand 3	B	437	443	anti-parallel
Strand 4	B	425	432	anti-parallel
Strand 5	B	403	406	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	448	452	first strand
Strand 2	B	479	483	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JRY

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JRY