Analysis of interatomic Contacts of Structural Units in PDB entry:
9JS9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JS9 entry

There is 1 chain in PDB entry 9JS9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 THR 9GLY 409
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9JS9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
18 30Right-handed alpha
Helix 2
AA2
B
47 56Right-handed alpha
Helix 3
AA3
B
63 66Right-handed 310
Helix 4
AA4
B
67 72Right-handed alpha
Helix 5
AA5
B
81 85Right-handed 310
Helix 6
AA6
B
96 102Right-handed alpha
Helix 7
AA7
B
103 109Right-handed alpha
Helix 8
AA8
B
111 137Right-handed alpha
Helix 9
AA9
B
138 141Right-handed 310
Helix 10
AB1
B
145 149Right-handed alpha
Helix 11
AB2
B
151 163Right-handed alpha
Helix 12
AB3
B
165 167Right-handed 310
Helix 13
AB4
B
168 181Right-handed alpha
Helix 14
AB5
B
185 210Right-handed alpha
Helix 15
AB6
B
214 222Right-handed alpha
Helix 16
AB7
B
230 263Right-handed alpha
Helix 17
AB8
B
263 272Right-handed alpha
Helix 18
AB9
B
276 289Right-handed alpha
Helix 19
AC1
B
319 325Right-handed alpha
Helix 20
AC2
B
326 331Right-handed alpha
Helix 21
AC3
B
343 347Right-handed 310
Helix 22
AC4
B
359 378Right-handed alpha
Helix 23
AC5
B
386 390Right-handed 310
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There are 3 sheets in PDB entry 9JS9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
32 37parallel
Strand 3
B
40 45anti-parallel
Strand 4
B
315 318parallel
Strand 5
B
294 299anti-parallel
Strand 6
B
60 61anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
405 407anti-parallel
Strand 3
B
382 383anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 304first strand
Strand 2
B
309 310anti-parallel
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