Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JSB entry

There are 6 chains in PDB entry 9JSB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 3	ILE 485
D	GLY 161	VAL 413
G	A 1	U 5
H	A 1	U 5
B	PHE 3	ILE 485
E	GLY 161	VAL 413

There are 38 helices in PDB entry 9JSB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	49	63	Right-handed alpha
Helix 3	AA3	A	106	114	Right-handed alpha
Helix 4	AA4	A	117	138	Right-handed alpha
Helix 5	AA5	A	151	164	Right-handed alpha
Helix 6	AA6	A	181	190	Right-handed alpha
Helix 7	AA7	A	202	206	Right-handed alpha
Helix 8	AA8	A	212	220	Right-handed alpha
Helix 9	AA9	A	225	230	Right-handed alpha
Helix 10	AB1	A	230	241	Right-handed alpha
Helix 11	AB2	A	308	327	Right-handed alpha
Helix 12	AB3	A	343	355	Right-handed alpha
Helix 13	AB4	A	429	438	Right-handed alpha
Helix 14	AB5	A	455	468	Right-handed alpha
Helix 15	AB6	A	480	484	Right-handed 310
Helix 16	AB7	D	221	225	Right-handed 310
Helix 17	AB8	D	235	240	Right-handed alpha
Helix 18	AB9	D	244	261	Right-handed alpha
Helix 19	AC1	D	370	377	Right-handed alpha
Helix 20	AC2	B	23	31	Right-handed alpha
Helix 21	AC3	B	49	64	Right-handed alpha
Helix 22	AC4	B	106	114	Right-handed alpha
Helix 23	AC5	B	117	137	Right-handed alpha
Helix 24	AC6	B	151	164	Right-handed alpha
Helix 25	AC7	B	181	190	Right-handed alpha
Helix 26	AC8	B	201	206	Right-handed alpha
Helix 27	AC9	B	212	220	Right-handed alpha
Helix 28	AD1	B	225	230	Right-handed alpha
Helix 29	AD2	B	230	240	Right-handed alpha
Helix 30	AD3	B	308	327	Right-handed alpha
Helix 31	AD4	B	343	355	Right-handed alpha
Helix 32	AD5	B	429	439	Right-handed alpha
Helix 33	AD6	B	455	468	Right-handed alpha
Helix 34	AD7	B	480	484	Right-handed 310
Helix 35	AD8	E	227	231	Right-handed 310
Helix 36	AD9	E	235	240	Right-handed alpha
Helix 37	AE1	E	244	261	Right-handed alpha
Helix 38	AE2	E	370	377	Right-handed alpha

There are 22 sheets in PDB entry 9JSB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	248	249	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	43	first strand
Strand 2	A	93	95	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	48	first strand
Strand 2	A	102	103	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	197	201	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	281	282	first strand
Strand 2	A	288	289	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	297	300	first strand
Strand 2	A	303	306	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	338	first strand
Strand 2	A	362	366	parallel
Strand 3	A	421	422	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	388	first strand
Strand 2	A	397	398	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	324	328	first strand
Strand 2	D	334	339	anti-parallel
Strand 3	D	168	172	anti-parallel
Strand 4	D	402	403	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	179	181	first strand
Strand 2	D	210	212	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	267	270	first strand
Strand 2	D	275	278	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	288	291	first strand
Strand 2	D	298	301	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	7	first strand
Strand 2	B	387	389	anti-parallel
Strand 3	B	397	398	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	15	first strand
Strand 2	B	247	249	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	41	43	first strand
Strand 2	B	93	95	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	103	first strand
Strand 2	B	46	48	parallel
Strand 3	B	146	149	parallel
Strand 4	B	197	200	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	289	first strand
Strand 2	B	281	283	anti-parallel
Strand 3	B	259	261	anti-parallel
Strand 4	B	334	338	parallel
Strand 5	B	363	369	parallel
Strand 6	B	418	422	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	297	300	first strand
Strand 2	B	303	306	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	168	169	first strand
Strand 2	E	336	339	anti-parallel
Strand 3	E	324	327	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	171	172	first strand
Strand 2	E	402	403	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	270	first strand
Strand 2	E	275	278	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	289	291	first strand
Strand 2	E	298	300	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JSB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSB