Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JSF entry

There is 1 chain in PDB entry 9JSF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 216LEU 747
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9JSF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
226 233Right-handed alpha
Helix 2
AA2
A
245 252Right-handed 310
Helix 3
AA3
A
271 278Right-handed alpha
Helix 4
AA4
A
285 290Right-handed 310
Helix 5
AA5
A
331 337Right-handed alpha
Helix 6
AA6
A
462 471Right-handed alpha
Helix 7
AA7
A
502 511Right-handed alpha
Helix 8
AA8
A
545 555Right-handed alpha
Helix 9
AA9
A
580 592Right-handed alpha
Helix 10
AB1
A
598 602Right-handed 310
Helix 11
AB2
A
658 662Right-handed 310
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There are 9 sheets in PDB entry 9JSF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
234 237first strand
Strand 2
A
240 243anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 422first strand
Strand 2
A
402 412anti-parallel
Strand 3
A
476 485anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
324 329anti-parallel
Strand 6
A
299 307anti-parallel
Strand 7
A
389 396anti-parallel
Strand 8
A
437 438anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
429 432first strand
Strand 2
A
402 412anti-parallel
Strand 3
A
476 485anti-parallel
Strand 4
A
361 366anti-parallel
Strand 5
A
324 329anti-parallel
Strand 6
A
299 307anti-parallel
Strand 7
A
389 396anti-parallel
Strand 8
A
446 447anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
351 352first strand
Strand 2
A
576 579parallel
Strand 3
A
609 613anti-parallel
Strand 4
A
513 519parallel
Strand 5
A
524 530anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
488 489first strand
Strand 2
A
495 496anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
557 559first strand
Strand 2
A
562 565anti-parallel
Strand 3
A
568 569anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 619first strand
Strand 2
A
730 739anti-parallel
Strand 3
A
647 649anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
617 619first strand
Strand 2
A
730 739anti-parallel
Strand 3
A
667 675anti-parallel
Strand 4
A
704 711anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
652 657first strand
Strand 2
A
720 726anti-parallel
Strand 3
A
683 688anti-parallel
Strand 4
A
692 697anti-parallel
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