Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JSP entry

There are 4 chains in PDB entry 9JSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 3ILE 485
B
 ILE 166PRO 407
G
 A 1 C 12
T
 G 9 T 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 9JSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 30Right-handed alpha
Helix 2
AA2
A
49 63Right-handed alpha
Helix 3
AA3
A
105 113Right-handed alpha
Helix 4
AA4
A
119 139Right-handed alpha
Helix 5
AA5
A
151 160Right-handed alpha
Helix 6
AA6
A
181 191Right-handed alpha
Helix 7
AA7
A
201 206Right-handed 310
Helix 8
AA8
A
225 242Right-handed alpha
Helix 9
AA9
A
311 328Right-handed alpha
Helix 10
AB1
A
343 357Right-handed alpha
Helix 11
AB2
A
429 441Right-handed alpha
Helix 12
AB3
A
455 469Right-handed alpha
Helix 13
AB4
A
480 485Right-handed alpha
Helix 14
AB5
B
187 195Right-handed alpha
Helix 15
AB6
B
216 220Right-handed 310
Helix 16
AB7
B
227 229Right-handed 310
Helix 17
AB8
B
236 241Right-handed alpha
Helix 18
AB9
B
245 263Right-handed alpha
Helix 19
AC1
B
355 364Right-handed alpha
Helix 20
AC2
B
371 384Right-handed alpha
Back to top of page

There are 9 sheets in PDB entry 9JSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4 7first strand
Strand 2
A
387 391anti-parallel
Strand 3
A
394 398anti-parallel
Strand 4
A
418 421anti-parallel
Strand 5
A
361 368anti-parallel
Strand 6
A
333 338parallel
Strand 7
A
258 259parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 96first strand
Strand 2
A
40 47parallel
Strand 3
A
145 148parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
261 262first strand
Strand 2
A
279 281anti-parallel
Strand 3
A
289 291anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
265 266first strand
Strand 2
A
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 172first strand
Strand 2
B
402 403anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
177 180anti-parallel
Strand 3
B
231 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
268 269first strand
Strand 2
B
276 277anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
322 323first strand
Strand 2
B
340 341anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 330first strand
Strand 2
B
333 337anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il