Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JSZ entry

There are 16 chains in PDB entry 9JSZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 485
B	THR 6	LYS 424
M	MET 1	ILE 485
N	ALA 7	LYS 424
P	A 2	A 19
O	A 1	U 19
L	A 2	A 19
K	A 1	A 18
H	A 2	A 19
G	A 1	U 19
E	THR 2	ILE 485
F	THR 6	LYS 424
I	MET 1	ILE 485
J	ALA 7	LYS 424
C	A 1	U 19
D	A 2	A 19

There are 91 helices in PDB entry 9JSZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	18	Right-handed 310
Helix 2	AA2	A	23	32	Right-handed alpha
Helix 3	AA3	A	49	65	Right-handed alpha
Helix 4	AA4	A	105	114	Right-handed alpha
Helix 5	AA5	A	117	139	Right-handed alpha
Helix 6	AA6	A	151	157	Right-handed alpha
Helix 7	AA7	A	182	190	Right-handed alpha
Helix 8	AA8	A	201	206	Right-handed alpha
Helix 9	AA9	A	226	243	Right-handed alpha
Helix 10	AB1	A	309	328	Right-handed alpha
Helix 11	AB2	A	343	356	Right-handed alpha
Helix 12	AB3	A	429	441	Right-handed alpha
Helix 13	AB4	A	455	469	Right-handed alpha
Helix 14	AB5	A	480	484	Right-handed 310
Helix 15	AB6	B	7	25	Right-handed alpha
Helix 16	AB7	B	137	143	Right-handed alpha
Helix 17	AB8	B	185	194	Right-handed alpha
Helix 18	AB9	B	222	227	Right-handed alpha
Helix 19	AC1	B	244	263	Right-handed alpha
Helix 20	AC2	B	355	366	Right-handed alpha
Helix 21	AC3	B	368	383	Right-handed alpha
Helix 22	AC4	B	415	420	Right-handed 310
Helix 23	AC5	M	16	18	Right-handed 310
Helix 24	AC6	M	23	32	Right-handed alpha
Helix 25	AC7	M	49	64	Right-handed alpha
Helix 26	AC8	M	105	113	Right-handed alpha
Helix 27	AC9	M	117	139	Right-handed alpha
Helix 28	AD1	M	151	159	Right-handed alpha
Helix 29	AD2	M	182	190	Right-handed alpha
Helix 30	AD3	M	201	206	Right-handed alpha
Helix 31	AD4	M	225	243	Right-handed alpha
Helix 32	AD5	M	309	328	Right-handed alpha
Helix 33	AD6	M	343	358	Right-handed alpha
Helix 34	AD7	M	429	439	Right-handed alpha
Helix 35	AD8	M	455	468	Right-handed alpha
Helix 36	AD9	M	480	484	Right-handed 310
Helix 37	AE1	N	8	26	Right-handed alpha
Helix 38	AE2	N	82	91	Right-handed alpha
Helix 39	AE3	N	138	142	Right-handed 310
Helix 40	AE4	N	185	196	Right-handed alpha
Helix 41	AE5	N	220	226	Right-handed 310
Helix 42	AE6	N	236	241	Right-handed alpha
Helix 43	AE7	N	245	262	Right-handed alpha
Helix 44	AE8	N	271	275	Right-handed 310
Helix 45	AE9	N	355	366	Right-handed alpha
Helix 46	AF1	N	367	378	Right-handed alpha
Helix 47	AF2	N	416	420	Right-handed 310
Helix 48	AF3	E	16	18	Right-handed 310
Helix 49	AF4	E	23	32	Right-handed alpha
Helix 50	AF5	E	49	63	Right-handed alpha
Helix 51	AF6	E	64	66	Right-handed 310
Helix 52	AF7	E	109	114	Right-handed alpha
Helix 53	AF8	E	118	139	Right-handed alpha
Helix 54	AF9	E	151	160	Right-handed alpha
Helix 55	AG1	E	184	189	Right-handed alpha
Helix 56	AG2	E	201	206	Right-handed alpha
Helix 57	AG3	E	227	243	Right-handed alpha
Helix 58	AG4	E	308	328	Right-handed alpha
Helix 59	AG5	E	343	358	Right-handed alpha
Helix 60	AG6	E	429	439	Right-handed alpha
Helix 61	AG7	E	455	469	Right-handed alpha
Helix 62	AG8	F	7	25	Right-handed alpha
Helix 63	AG9	F	83	89	Right-handed alpha
Helix 64	AH1	F	138	143	Right-handed alpha
Helix 65	AH2	F	185	196	Right-handed alpha
Helix 66	AH3	F	244	261	Right-handed alpha
Helix 67	AH4	F	355	360	Right-handed alpha
Helix 68	AH5	F	361	366	Right-handed alpha
Helix 69	AH6	F	370	382	Right-handed alpha
Helix 70	AH7	F	415	419	Right-handed 310
Helix 71	AH8	I	23	31	Right-handed alpha
Helix 72	AH9	I	49	66	Right-handed alpha
Helix 73	AI1	I	97	101	Right-handed 310
Helix 74	AI2	I	105	113	Right-handed alpha
Helix 75	AI3	I	117	139	Right-handed alpha
Helix 76	AI4	I	151	156	Right-handed alpha
Helix 77	AI5	I	182	189	Right-handed alpha
Helix 78	AI6	I	202	206	Right-handed alpha
Helix 79	AI7	I	225	243	Right-handed alpha
Helix 80	AI8	I	311	328	Right-handed alpha
Helix 81	AI9	I	343	358	Right-handed alpha
Helix 82	AJ1	I	429	440	Right-handed alpha
Helix 83	AJ2	I	455	469	Right-handed alpha
Helix 84	AJ3	I	480	484	Right-handed 310
Helix 85	AJ4	J	8	26	Right-handed alpha
Helix 86	AJ5	J	82	91	Right-handed alpha
Helix 87	AJ6	J	140	144	Right-handed 310
Helix 88	AJ7	J	185	195	Right-handed alpha
Helix 89	AJ8	J	244	263	Right-handed alpha
Helix 90	AJ9	J	354	366	Right-handed alpha
Helix 91	AK1	J	367	382	Right-handed alpha

There are 41 sheets in PDB entry 9JSZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	387	389	anti-parallel
Strand 3	A	397	398	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	21	first strand
Strand 2	A	13	14	anti-parallel
Strand 3	A	248	249	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	103	first strand
Strand 2	A	41	48	parallel
Strand 3	A	145	147	parallel
Strand 4	A	197	198	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	289	292	first strand
Strand 2	A	277	283	anti-parallel
Strand 3	A	259	264	anti-parallel
Strand 4	A	333	338	parallel
Strand 5	A	361	368	parallel
Strand 6	A	419	422	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	B	162	166	anti-parallel
Strand 3	B	408	411	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	43	48	anti-parallel
Strand 3	B	51	63	anti-parallel
Strand 4	B	96	102	parallel
Strand 5	B	107	111	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	168	170	first strand
Strand 2	B	334	337	anti-parallel
Strand 3	B	328	329	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	234	235	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	291	first strand
Strand 2	B	298	300	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	315	323	anti-parallel
Strand 3	B	340	345	anti-parallel

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There are 9 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	5	7	first strand
Strand 2	M	387	390	anti-parallel
Strand 3	M	395	397	anti-parallel
Strand 4	M	418	422	anti-parallel
Strand 5	M	361	368	anti-parallel
Strand 6	M	333	338	parallel
Strand 7	M	258	267	parallel
Strand 8	M	274	283	anti-parallel
Strand 9	M	289	290	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	21	first strand
Strand 2	M	13	14	anti-parallel
Strand 3	M	248	249	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	95	first strand
Strand 2	M	41	48	parallel
Strand 3	M	102	103	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	95	first strand
Strand 2	M	41	48	parallel
Strand 3	M	145	149	parallel
Strand 4	M	197	200	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	375	376	first strand
Strand 2	N	163	166	anti-parallel
Strand 3	N	408	410	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	43	44	first strand
Strand 2	N	57	58	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	77	79	first strand
Strand 2	N	124	126	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	97	98	first strand
Strand 2	N	111	112	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	327	330	first strand
Strand 2	N	333	337	anti-parallel
Strand 3	N	168	172	anti-parallel
Strand 4	N	402	403	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	205	207	first strand
Strand 2	N	210	213	anti-parallel
Strand 3	N	176	181	anti-parallel
Strand 4	N	232	235	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	303	306	first strand
Strand 2	N	317	322	anti-parallel
Strand 3	N	341	345	anti-parallel

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There are 9 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	6	first strand
Strand 2	E	388	391	anti-parallel
Strand 3	E	394	396	anti-parallel
Strand 4	E	419	422	anti-parallel
Strand 5	E	361	366	anti-parallel
Strand 6	E	333	338	parallel
Strand 7	E	258	264	parallel
Strand 8	E	277	283	anti-parallel
Strand 9	E	289	292	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	13	14	first strand
Strand 2	E	20	21	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	94	95	first strand
Strand 2	E	42	46	parallel
Strand 3	E	145	147	parallel
Strand 4	E	197	198	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	29	31	first strand
Strand 2	F	43	48	anti-parallel
Strand 3	F	51	61	anti-parallel
Strand 4	F	96	101	parallel
Strand 5	F	108	109	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	164	first strand
Strand 2	F	409	410	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	335	337	first strand
Strand 2	F	168	172	anti-parallel
Strand 3	F	402	403	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	176	179	first strand
Strand 2	F	232	235	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	206	first strand
Strand 2	F	211	213	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	276	277	anti-parallel
Strand 3	F	315	323	anti-parallel
Strand 4	F	304	307	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	269	first strand
Strand 2	F	276	277	anti-parallel
Strand 3	F	315	323	anti-parallel
Strand 4	F	341	345	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	387	391	anti-parallel
Strand 3	I	394	397	anti-parallel
Strand 4	I	418	422	anti-parallel
Strand 5	I	361	368	anti-parallel
Strand 6	I	333	338	parallel
Strand 7	I	259	261	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	I	13	15	anti-parallel
Strand 3	I	248	249	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	95	first strand
Strand 2	I	41	47	parallel
Strand 3	I	145	150	parallel
Strand 4	I	197	201	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	264	266	first strand
Strand 2	I	275	277	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	282	283	first strand
Strand 2	I	289	290	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	375	376	first strand
Strand 2	J	162	166	anti-parallel
Strand 3	J	408	411	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	32	first strand
Strand 2	J	42	46	anti-parallel
Strand 3	J	57	64	anti-parallel
Strand 4	J	96	102	parallel
Strand 5	J	107	112	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	79	first strand
Strand 2	J	124	127	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	276	277	first strand
Strand 2	J	321	330	anti-parallel
Strand 3	J	333	342	anti-parallel
Strand 4	J	168	172	anti-parallel
Strand 5	J	402	403	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	204	206	first strand
Strand 2	J	211	213	anti-parallel
Strand 3	J	177	180	anti-parallel
Strand 4	J	232	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JSZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JSZ