Analysis of interatomic Contacts of Structural Units in PDB entry:
9JT2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JT2 entry

There are 18 chains in PDB entry 9JT2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	ILE 485
B	LYS 3	LYS 424
C	A 1	U 19
D	A 2	A 19
E	THR 2	ILE 485
F	LYS 3	LYS 424
G	A 1	A 20
H	T 1	A 19
I	THR 2	ILE 485
J	ALA 7	LYS 424
K	A 1	A 18
L	A 2	A 19
M	THR 2	ILE 485
N	ALA 7	LYS 424
O	A 1	U 19
P	A 2	A 19
Q	G 1	C 8
R	G 1	C 8

There are 84 helices in PDB entry 9JT2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	23	31	Right-handed alpha
Helix 2	AA2	A	49	66	Right-handed alpha
Helix 3	AA3	A	105	112	Right-handed alpha
Helix 4	AA4	A	119	138	Right-handed alpha
Helix 5	AA5	A	151	159	Right-handed alpha
Helix 6	AA6	A	181	190	Right-handed alpha
Helix 7	AA7	A	191	193	Right-handed 310
Helix 8	AA8	A	225	243	Right-handed alpha
Helix 9	AA9	A	308	328	Right-handed alpha
Helix 10	AB1	A	343	358	Right-handed alpha
Helix 11	AB2	A	432	440	Right-handed alpha
Helix 12	AB3	A	455	469	Right-handed alpha
Helix 13	AB4	A	480	484	Right-handed 310
Helix 14	AB5	B	6	26	Right-handed alpha
Helix 15	AB6	B	85	91	Right-handed alpha
Helix 16	AB7	B	137	143	Right-handed alpha
Helix 17	AB8	B	186	196	Right-handed alpha
Helix 18	AB9	B	222	227	Right-handed alpha
Helix 19	AC1	B	236	241	Right-handed alpha
Helix 20	AC2	B	244	260	Right-handed alpha
Helix 21	AC3	B	355	365	Right-handed alpha
Helix 22	AC4	B	369	384	Right-handed alpha
Helix 23	AC5	E	23	32	Right-handed alpha
Helix 24	AC6	E	51	66	Right-handed alpha
Helix 25	AC7	E	107	112	Right-handed alpha
Helix 26	AC8	E	118	138	Right-handed alpha
Helix 27	AC9	E	182	190	Right-handed alpha
Helix 28	AD1	E	201	206	Right-handed alpha
Helix 29	AD2	E	225	243	Right-handed alpha
Helix 30	AD3	E	309	328	Right-handed alpha
Helix 31	AD4	E	345	356	Right-handed alpha
Helix 32	AD5	E	429	439	Right-handed alpha
Helix 33	AD6	E	455	469	Right-handed alpha
Helix 34	AD7	E	480	484	Right-handed 310
Helix 35	AD8	F	6	25	Right-handed alpha
Helix 36	AD9	F	82	87	Right-handed alpha
Helix 37	AE1	F	88	90	Right-handed 310
Helix 38	AE2	F	138	143	Right-handed alpha
Helix 39	AE3	F	187	196	Right-handed alpha
Helix 40	AE4	F	244	262	Right-handed alpha
Helix 41	AE5	F	354	365	Right-handed alpha
Helix 42	AE6	F	367	382	Right-handed alpha
Helix 43	AE7	I	23	32	Right-handed alpha
Helix 44	AE8	I	49	67	Right-handed alpha
Helix 45	AE9	I	105	114	Right-handed alpha
Helix 46	AF1	I	117	138	Right-handed alpha
Helix 47	AF2	I	151	160	Right-handed alpha
Helix 48	AF3	I	181	190	Right-handed alpha
Helix 49	AF4	I	202	206	Right-handed alpha
Helix 50	AF5	I	225	243	Right-handed alpha
Helix 51	AF6	I	310	328	Right-handed alpha
Helix 52	AF7	I	344	358	Right-handed alpha
Helix 53	AF8	I	429	440	Right-handed alpha
Helix 54	AF9	I	455	468	Right-handed alpha
Helix 55	AG1	I	469	471	Right-handed 310
Helix 56	AG2	I	480	484	Right-handed 310
Helix 57	AG3	J	8	27	Right-handed alpha
Helix 58	AG4	J	84	90	Right-handed alpha
Helix 59	AG5	J	186	193	Right-handed alpha
Helix 60	AG6	J	220	225	Right-handed alpha
Helix 61	AG7	J	237	241	Right-handed 310
Helix 62	AG8	J	244	263	Right-handed alpha
Helix 63	AG9	J	356	365	Right-handed alpha
Helix 64	AH1	J	368	383	Right-handed alpha
Helix 65	AH2	M	23	31	Right-handed alpha
Helix 66	AH3	M	49	64	Right-handed alpha
Helix 67	AH4	M	105	112	Right-handed alpha
Helix 68	AH5	M	118	139	Right-handed alpha
Helix 69	AH6	M	151	159	Right-handed alpha
Helix 70	AH7	M	181	189	Right-handed alpha
Helix 71	AH8	M	227	243	Right-handed alpha
Helix 72	AH9	M	309	328	Right-handed alpha
Helix 73	AI1	M	343	358	Right-handed alpha
Helix 74	AI2	M	429	440	Right-handed alpha
Helix 75	AI3	M	455	469	Right-handed alpha
Helix 76	AI4	M	480	484	Right-handed 310
Helix 77	AI5	N	9	26	Right-handed alpha
Helix 78	AI6	N	82	90	Right-handed alpha
Helix 79	AI7	N	134	136	Right-handed 310
Helix 80	AI8	N	137	143	Right-handed alpha
Helix 81	AI9	N	188	194	Right-handed alpha
Helix 82	AJ1	N	244	263	Right-handed alpha
Helix 83	AJ2	N	355	363	Right-handed alpha
Helix 84	AJ3	N	369	381	Right-handed alpha

There are 36 sheets in PDB entry 9JT2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	387	391	anti-parallel
Strand 3	A	394	397	anti-parallel
Strand 4	A	418	422	anti-parallel
Strand 5	A	364	368	anti-parallel
Strand 6	A	336	338	parallel
Strand 7	A	259	264	parallel
Strand 8	A	277	283	anti-parallel
Strand 9	A	289	290	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	248	249	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	41	47	parallel
Strand 3	A	145	149	parallel
Strand 4	A	197	200	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	B	164	166	anti-parallel
Strand 3	B	408	409	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	43	48	anti-parallel
Strand 3	B	51	64	anti-parallel
Strand 4	B	96	102	parallel
Strand 5	B	107	112	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	77	first strand
Strand 2	B	126	127	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	337	first strand
Strand 2	B	168	172	anti-parallel
Strand 3	B	402	403	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	234	235	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	304	307	first strand
Strand 2	B	315	323	anti-parallel
Strand 3	B	340	345	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	387	390	anti-parallel
Strand 3	E	395	398	anti-parallel
Strand 4	E	418	422	anti-parallel
Strand 5	E	361	368	anti-parallel
Strand 6	E	333	338	parallel
Strand 7	E	258	267	parallel
Strand 8	E	274	283	anti-parallel
Strand 9	E	289	292	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	21	first strand
Strand 2	E	13	14	anti-parallel
Strand 3	E	248	249	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	41	49	parallel
Strand 3	E	102	104	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	41	49	parallel
Strand 3	E	145	147	parallel
Strand 4	E	197	198	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	376	first strand
Strand 2	F	160	166	anti-parallel
Strand 3	F	408	413	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	42	44	anti-parallel
Strand 3	F	57	64	anti-parallel
Strand 4	F	96	102	parallel
Strand 5	F	107	112	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	47	48	first strand
Strand 2	F	51	52	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	78	80	first strand
Strand 2	F	123	125	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	304	307	first strand
Strand 2	F	315	325	anti-parallel
Strand 3	F	335	345	anti-parallel
Strand 4	F	168	172	anti-parallel
Strand 5	F	402	403	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	5	7	first strand
Strand 2	I	387	391	anti-parallel
Strand 3	I	394	397	anti-parallel
Strand 4	I	418	422	anti-parallel
Strand 5	I	361	368	anti-parallel
Strand 6	I	333	338	parallel
Strand 7	I	259	267	parallel
Strand 8	I	274	283	anti-parallel
Strand 9	I	289	292	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	19	21	first strand
Strand 2	I	13	15	anti-parallel
Strand 3	I	248	249	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	93	103	first strand
Strand 2	I	41	48	parallel
Strand 3	I	145	150	parallel
Strand 4	I	197	201	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	375	376	first strand
Strand 2	J	162	166	anti-parallel
Strand 3	J	408	411	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	42	46	first strand
Strand 2	J	53	64	anti-parallel
Strand 3	J	96	102	parallel
Strand 4	J	107	112	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	76	79	first strand
Strand 2	J	124	127	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	267	270	first strand
Strand 2	J	275	278	anti-parallel
Strand 3	J	320	330	anti-parallel
Strand 4	J	333	343	anti-parallel
Strand 5	J	169	172	anti-parallel
Strand 6	J	402	403	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	178	179	first strand
Strand 2	J	212	213	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	305	308	first strand
Strand 2	J	311	318	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	387	390	anti-parallel
Strand 3	M	395	397	anti-parallel
Strand 4	M	418	422	anti-parallel
Strand 5	M	361	368	anti-parallel
Strand 6	M	333	338	parallel
Strand 7	M	259	263	parallel
Strand 8	M	280	281	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	20	21	first strand
Strand 2	M	13	14	anti-parallel
Strand 3	M	248	249	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	93	103	first strand
Strand 2	M	41	48	parallel
Strand 3	M	145	149	parallel
Strand 4	M	197	200	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	375	376	first strand
Strand 2	N	162	166	anti-parallel
Strand 3	N	408	411	anti-parallel

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There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	31	first strand
Strand 2	N	43	47	anti-parallel
Strand 3	N	52	60	anti-parallel
Strand 4	N	96	102	parallel
Strand 5	N	63	64	parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	29	31	first strand
Strand 2	N	43	47	anti-parallel
Strand 3	N	52	60	anti-parallel
Strand 4	N	96	102	parallel
Strand 5	N	107	113	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	76	79	first strand
Strand 2	N	124	127	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	169	170	first strand
Strand 2	N	333	343	anti-parallel
Strand 3	N	320	330	anti-parallel
Strand 4	N	276	278	anti-parallel
Strand 5	N	268	269	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	177	179	first strand
Strand 2	N	232	234	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JT2

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JT2