Analysis of interatomic Contacts of Structural Units in PDB entry:
9JT3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JT3 entry

There are 2 chains in PDB entry 9JT3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 8THR 241
B
 PRO 8THR 241
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9JT3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 35Right-handed alpha
Helix 2
AA2
A
65 67Right-handed 310
Helix 3
AA3
A
83 94Right-handed alpha
Helix 4
AA4
A
151 164Right-handed alpha
Helix 5
AA5
A
202 210Right-handed alpha
Helix 6
AA6
B
22 35Right-handed alpha
Helix 7
AA7
B
83 94Right-handed alpha
Helix 8
AA8
B
151 164Right-handed alpha
Helix 9
AA9
B
202 210Right-handed alpha
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There are 5 sheets in PDB entry 9JT3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 53first strand
Strand 2
A
56 63anti-parallel
Strand 3
A
13 20parallel
Strand 4
A
74 80anti-parallel
Strand 5
A
121 127parallel
Strand 6
A
109 115anti-parallel
Strand 7
A
97 105anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
B
71 72anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 184first strand
Strand 2
A
142 149parallel
Strand 3
A
192 200anti-parallel
Strand 4
A
235 241parallel
Strand 5
A
223 229anti-parallel
Strand 6
A
213 220anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 53first strand
Strand 2
B
56 63anti-parallel
Strand 3
B
13 20parallel
Strand 4
B
74 80anti-parallel
Strand 5
B
121 127parallel
Strand 6
B
109 115anti-parallel
Strand 7
B
97 105anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 184first strand
Strand 2
B
142 149parallel
Strand 3
B
192 199anti-parallel
Strand 4
B
235 240parallel
Strand 5
B
223 229anti-parallel
Strand 6
B
213 220anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il