Analysis of interatomic Contacts of Structural Units in PDB entry:
9JT8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JT8 entry

There are 3 chains in PDB entry 9JT8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 3	LEU 405
B	THR 2	LEU 405
C	THR 2	LEU 405

There are 47 helices in PDB entry 9JT8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	30	Right-handed alpha
Helix 2	AA2	A	40	43	Right-handed 310
Helix 3	AA3	A	53	64	Right-handed alpha
Helix 4	AA4	A	76	80	Right-handed 310
Helix 5	AA5	A	87	96	Right-handed alpha
Helix 6	AA6	A	105	124	Right-handed alpha
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	180	196	Right-handed alpha
Helix 9	AA9	A	216	221	Right-handed 310
Helix 10	AB1	A	223	235	Right-handed alpha
Helix 11	AB2	A	238	243	Right-handed alpha
Helix 12	AB3	A	245	249	Right-handed 310
Helix 13	AB4	A	257	261	Right-handed 310
Helix 14	AB5	A	271	273	Right-handed 310
Helix 15	AB6	A	281	299	Right-handed alpha
Helix 16	AB7	A	305	309	Right-handed 310
Helix 17	AB8	B	17	29	Right-handed alpha
Helix 18	AB9	B	40	43	Right-handed 310
Helix 19	AC1	B	53	64	Right-handed alpha
Helix 20	AC2	B	76	81	Right-handed 310
Helix 21	AC3	B	87	96	Right-handed alpha
Helix 22	AC4	B	105	124	Right-handed alpha
Helix 23	AC5	B	125	130	Right-handed 310
Helix 24	AC6	B	180	195	Right-handed alpha
Helix 25	AC7	B	223	235	Right-handed alpha
Helix 26	AC8	B	238	243	Right-handed alpha
Helix 27	AC9	B	257	261	Right-handed 310
Helix 28	AD1	B	269	273	Right-handed 310
Helix 29	AD2	B	281	300	Right-handed alpha
Helix 30	AD3	B	305	309	Right-handed 310
Helix 31	AD4	B	341	345	Right-handed 310
Helix 32	AD5	B	394	398	Right-handed 310
Helix 33	AD6	C	17	30	Right-handed alpha
Helix 34	AD7	C	40	43	Right-handed 310
Helix 35	AD8	C	53	64	Right-handed alpha
Helix 36	AD9	C	76	80	Right-handed 310
Helix 37	AE1	C	87	96	Right-handed alpha
Helix 38	AE2	C	105	124	Right-handed alpha
Helix 39	AE3	C	125	130	Right-handed 310
Helix 40	AE4	C	180	195	Right-handed alpha
Helix 41	AE5	C	223	235	Right-handed alpha
Helix 42	AE6	C	238	243	Right-handed alpha
Helix 43	AE7	C	245	249	Right-handed 310
Helix 44	AE8	C	257	261	Right-handed 310
Helix 45	AE9	C	271	273	Right-handed 310
Helix 46	AF1	C	281	298	Right-handed alpha
Helix 47	AF2	C	305	309	Right-handed 310

There are 27 sheets in PDB entry 9JT8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	35	38	parallel
Strand 3	A	6	15	parallel
Strand 4	A	263	269	parallel
Strand 5	A	205	206	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	35	38	parallel
Strand 3	A	6	15	parallel
Strand 4	A	301	304	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	139	first strand
Strand 2	A	199	200	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	147	150	first strand
Strand 2	A	153	155	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	279	280	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	318	319	first strand
Strand 2	A	338	339	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	326	first strand
Strand 2	A	331	334	anti-parallel
Strand 3	A	353	355	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	367	368	first strand
Strand 2	A	387	388	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	376	first strand
Strand 2	A	379	383	anti-parallel
Strand 3	A	402	404	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	35	38	parallel
Strand 3	B	7	15	parallel
Strand 4	B	263	268	parallel
Strand 5	B	205	206	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	67	70	first strand
Strand 2	B	35	38	parallel
Strand 3	B	7	15	parallel
Strand 4	B	302	304	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	138	139	first strand
Strand 2	B	199	200	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	150	first strand
Strand 2	B	153	155	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	275	276	first strand
Strand 2	B	279	280	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	319	first strand
Strand 2	B	338	339	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	324	326	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	353	355	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	368	first strand
Strand 2	B	387	388	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	373	376	first strand
Strand 2	B	379	383	anti-parallel
Strand 3	B	402	404	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	35	38	parallel
Strand 3	C	6	15	parallel
Strand 4	C	263	269	parallel
Strand 5	C	205	206	parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	70	first strand
Strand 2	C	35	38	parallel
Strand 3	C	6	15	parallel
Strand 4	C	301	303	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	139	first strand
Strand 2	C	199	200	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	150	first strand
Strand 2	C	153	155	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	275	276	first strand
Strand 2	C	279	280	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	318	319	first strand
Strand 2	C	338	339	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	324	327	first strand
Strand 2	C	330	334	anti-parallel
Strand 3	C	353	355	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	367	368	first strand
Strand 2	C	387	388	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	373	376	first strand
Strand 2	C	379	383	anti-parallel
Strand 3	C	402	404	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JT8

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JT8