Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JTC entry

There are 3 chains in PDB entry 9JTC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 29LEU 998
B
 ALA 3PRO 152
C
 SER 80GLY 154
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9JTC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
41 55Right-handed alpha
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
79 83Right-handed 310
Helix 5
AA5
A
86 99Right-handed alpha
Helix 6
AA6
A
112 117Right-handed alpha
Helix 7
AA7
A
128 142Right-handed alpha
Helix 8
AA8
A
217 221Right-handed 310
Helix 9
AA9
A
266 271Right-handed alpha
Helix 10
AB1
A
282 304Right-handed alpha
Helix 11
AB2
A
311 325Right-handed alpha
Helix 12
AB3
A
341 352Right-handed alpha
Helix 13
AB4
A
356 377Right-handed alpha
Helix 14
AB5
A
391 394Right-handed 310
Helix 15
AB6
A
414 422Right-handed alpha
Helix 16
AB7
A
422 431Right-handed alpha
Helix 17
AB8
A
440 454Right-handed alpha
Helix 18
AB9
A
472 476Right-handed 310
Helix 19
AC1
A
483 487Right-handed 310
Helix 20
AC2
A
490 503Right-handed alpha
Helix 21
AC3
A
516 520Right-handed 310
Helix 22
AC4
A
524 531Right-handed alpha
Helix 23
AC5
A
540 555Right-handed alpha
Helix 24
AC6
A
595 600Right-handed alpha
Helix 25
AC7
A
605 622Right-handed alpha
Helix 26
AC8
A
622 631Right-handed alpha
Helix 27
AC9
A
632 636Right-handed 310
Helix 28
AD1
A
637 645Right-handed alpha
Helix 29
AD2
A
646 655Right-handed alpha
Helix 30
AD3
A
663 680Right-handed alpha
Helix 31
AD4
A
680 690Right-handed alpha
Helix 32
AD5
A
719 738Right-handed alpha
Helix 33
AD6
A
744 755Right-handed alpha
Helix 34
AD7
A
760 766Right-handed 310
Helix 35
AD8
A
769 774Right-handed alpha
Helix 36
AD9
A
775 787Right-handed alpha
Helix 37
AE1
A
808 825Right-handed alpha
Helix 38
AE2
A
830 840Right-handed alpha
Helix 39
AE3
A
845 865Right-handed alpha
Helix 40
AE4
A
881 883Right-handed 310
Helix 41
AE5
A
919 932Right-handed alpha
Helix 42
AE6
A
951 961Right-handed alpha
Helix 43
AE7
B
4 16Right-handed alpha
Helix 44
AE8
B
45 49Right-handed 310
Helix 45
AE9
B
100 114Right-handed alpha
Helix 46
AF1
B
122 132Right-handed alpha
Helix 47
AF2
B
132 147Right-handed alpha
Helix 48
AF3
C
100 113Right-handed alpha
Helix 49
AF4
C
115 117Right-handed 310
Helix 50
AF5
C
134 138Right-handed 310
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There are 8 sheets in PDB entry 9JTC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
58 62parallel
Strand 3
A
34 38parallel
Strand 4
A
121 124parallel
Strand 5
A
145 152parallel
Strand 6
A
155 161anti-parallel
Strand 7
A
385 389anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 168first strand
Strand 2
A
260 262anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 227first strand
Strand 2
A
208 214anti-parallel
Strand 3
A
250 255anti-parallel
Strand 4
A
179 184anti-parallel
Strand 5
A
191 194anti-parallel
Strand 6
A
236 237anti-parallel
Strand 7
A
229 230anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
508 511first strand
Strand 2
A
462 466parallel
Strand 3
A
433 437parallel
Strand 4
A
533 536parallel
Strand 5
A
558 564parallel
Strand 6
A
567 573anti-parallel
Strand 7
A
875 879anti-parallel
Strand 8
A
884 888anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
896 898first strand
Strand 2
A
901 903anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
908 912first strand
Strand 2
A
993 997parallel
Strand 3
A
975 982anti-parallel
Strand 4
A
935 940anti-parallel
Strand 5
A
943 947anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 27first strand
Strand 2
B
34 39anti-parallel
Strand 3
B
51 56anti-parallel
Strand 4
B
67 70anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
90 93first strand
Strand 2
C
81 84anti-parallel
Strand 3
C
144 149parallel
Strand 4
C
119 123anti-parallel
Strand 5
C
126 128anti-parallel
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