Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JTD entry

There are 2 chains in PDB entry 9JTD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 19TRP 610
E
 THR 333GLY 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 9JTD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 53Right-handed alpha
Helix 2
AA2
A
55 82Right-handed alpha
Helix 3
AA3
A
84 88Right-handed 310
Helix 4
AA4
A
90 102Right-handed alpha
Helix 5
AA5
A
109 129Right-handed alpha
Helix 6
AA6
A
147 154Right-handed alpha
Helix 7
AA7
A
157 172Right-handed alpha
Helix 8
AA8
A
172 194Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
218 252Right-handed alpha
Helix 12
AB3
A
265 267Right-handed 310
Helix 13
AB4
A
274 282Right-handed 310
Helix 14
AB5
A
293 300Right-handed alpha
Helix 15
AB6
A
303 319Right-handed alpha
Helix 16
AB7
A
324 331Right-handed alpha
Helix 17
AB8
A
365 385Right-handed alpha
Helix 18
AB9
A
389 393Right-handed 310
Helix 19
AC1
A
399 414Right-handed alpha
Helix 20
AC2
A
414 421Right-handed alpha
Helix 21
AC3
A
431 448Right-handed alpha
Helix 22
AC4
A
448 466Right-handed alpha
Helix 23
AC5
A
469 471Right-handed 310
Helix 24
AC6
A
472 484Right-handed alpha
Helix 25
AC7
A
498 502Right-handed 310
Helix 26
AC8
A
503 508Right-handed alpha
Helix 27
AC9
A
512 533Right-handed alpha
Helix 28
AD1
A
547 559Right-handed alpha
Helix 29
AD2
A
565 574Right-handed alpha
Helix 30
AD3
A
581 599Right-handed alpha
Helix 31
AD4
E
338 343Right-handed alpha
Helix 32
AD5
E
349 353Right-handed 310
Helix 33
AD6
E
365 372Right-handed alpha
Helix 34
AD7
E
384 388Right-handed 310
Helix 35
AD8
E
404 408Right-handed alpha
Helix 36
AD9
E
416 422Right-handed alpha
Helix 37
AE1
E
502 505Right-handed 310
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There are 6 sheets in PDB entry 9JTD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
142 143anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
395 403anti-parallel
Strand 3
E
507 515anti-parallel
Strand 4
E
431 437anti-parallel
Strand 5
E
376 380anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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