Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JTI entry

There are 3 chains in PDB entry 9JTI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 24
A
 PRO 26ILE 182
A
 PHE 186LYS 595
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9JTI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
62 68Right-handed alpha
Helix 2
AA2
A
174 179Right-handed 310
Helix 3
AA3
A
186 189Right-handed 310
Helix 4
AA4
A
197 206Right-handed alpha
Helix 5
AA5
A
266 287Right-handed alpha
Helix 6
AA6
A
305 319Right-handed alpha
Helix 7
AA7
A
329 344Right-handed alpha
Helix 8
AA8
A
354 359Right-handed 310
Helix 9
AA9
A
371 386Right-handed alpha
Helix 10
AB1
A
399 416Right-handed alpha
Helix 11
AB2
A
433 443Right-handed alpha
Helix 12
AB3
A
453 467Right-handed alpha
Helix 13
AB4
A
476 480Right-handed 310
Helix 14
AB5
A
481 489Right-handed alpha
Helix 15
AB6
A
490 493Right-handed 310
Helix 16
AB7
A
502 508Right-handed 310
Helix 17
AB8
A
509 519Right-handed alpha
Helix 18
AB9
A
525 543Right-handed alpha
Helix 19
AC1
A
547 558Right-handed alpha
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There are 5 sheets in PDB entry 9JTI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
295 301first strand
Strand 2
A
4 10parallel
Strand 3
A
323 326parallel
Strand 4
A
346 349parallel
Strand 5
A
365 367parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 259first strand
Strand 2
A
30 41anti-parallel
Strand 3
A
46 57anti-parallel
Strand 4
A
209 217anti-parallel
Strand 5
A
222 232anti-parallel
Strand 6
A
235 245anti-parallel
Strand 7
A
131 140parallel
Strand 8
A
143 154anti-parallel
Strand 9
A
159 166anti-parallel
Strand 10
A
85 95anti-parallel
Strand 11
A
71 81anti-parallel
Strand 12
A
19 27anti-parallel
Strand 13
A
30 41anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
195 196anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 425first strand
Strand 2
A
392 396parallel
Strand 3
A
447 451parallel
Strand 4
A
472 475parallel
Strand 5
A
496 499parallel
Strand 6
A
581 585anti-parallel
Strand 7
A
591 593anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 562first strand
Strand 2
A
565 567anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il