Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JTS entry

There are 10 chains in PDB entry 9JTS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 391	ALA 1008
B	MET 1	CYS 350
C	HIS 385	ASN 1007
D	MET 1	SER 351
I	T 4	G 16
G	G 3	G 41
L	C 17	G 46
M	C 17	C 55
H	C 47	A 59
F	C 1	G 30

There are 61 helices in PDB entry 9JTS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	408	422	Right-handed alpha
Helix 2	AA2	A	427	443	Right-handed alpha
Helix 3	AA3	A	444	456	Right-handed alpha
Helix 4	AA4	A	463	474	Right-handed alpha
Helix 5	AA5	A	477	493	Right-handed alpha
Helix 6	AA6	A	499	507	Right-handed alpha
Helix 7	AA7	A	558	570	Right-handed alpha
Helix 8	AA8	A	570	581	Right-handed alpha
Helix 9	AA9	A	664	683	Right-handed alpha
Helix 10	AB1	A	708	716	Right-handed alpha
Helix 11	AB2	A	733	741	Right-handed alpha
Helix 12	AB3	A	749	763	Right-handed alpha
Helix 13	AB4	A	768	777	Right-handed alpha
Helix 14	AB5	A	792	812	Right-handed alpha
Helix 15	AB6	A	822	842	Right-handed alpha
Helix 16	AB7	A	850	858	Right-handed alpha
Helix 17	AB8	A	859	868	Right-handed alpha
Helix 18	AB9	A	873	890	Right-handed alpha
Helix 19	AC1	A	891	893	Right-handed 310
Helix 20	AC2	A	902	924	Right-handed alpha
Helix 21	AC3	A	933	942	Right-handed alpha
Helix 22	AC4	A	942	951	Right-handed alpha
Helix 23	AC5	A	958	975	Right-handed alpha
Helix 24	AC6	A	982	996	Right-handed alpha
Helix 25	AC7	A	1004	1008	Right-handed 310
Helix 26	AC8	B	11	13	Right-handed 310
Helix 27	AC9	B	168	172	Right-handed 310
Helix 28	AD1	B	308	313	Right-handed alpha
Helix 29	AD2	C	395	399	Right-handed 310
Helix 30	AD3	C	400	408	Right-handed alpha
Helix 31	AD4	C	410	423	Right-handed alpha
Helix 32	AD5	C	426	443	Right-handed alpha
Helix 33	AD6	C	444	457	Right-handed alpha
Helix 34	AD7	C	463	474	Right-handed alpha
Helix 35	AD8	C	477	493	Right-handed alpha
Helix 36	AD9	C	499	508	Right-handed alpha
Helix 37	AE1	C	558	570	Right-handed alpha
Helix 38	AE2	C	570	581	Right-handed alpha
Helix 39	AE3	C	665	683	Right-handed alpha
Helix 40	AE4	C	708	716	Right-handed alpha
Helix 41	AE5	C	733	740	Right-handed alpha
Helix 42	AE6	C	750	763	Right-handed alpha
Helix 43	AE7	C	768	777	Right-handed alpha
Helix 44	AE8	C	792	812	Right-handed alpha
Helix 45	AE9	C	822	841	Right-handed alpha
Helix 46	AF1	C	850	858	Right-handed alpha
Helix 47	AF2	C	859	867	Right-handed alpha
Helix 48	AF3	C	868	870	Right-handed 310
Helix 49	AF4	C	872	895	Right-handed alpha
Helix 50	AF5	C	902	908	Right-handed alpha
Helix 51	AF6	C	908	924	Right-handed alpha
Helix 52	AF7	C	933	942	Right-handed alpha
Helix 53	AF8	C	942	950	Right-handed alpha
Helix 54	AF9	C	953	957	Right-handed 310
Helix 55	AG1	C	958	975	Right-handed alpha
Helix 56	AG2	C	983	995	Right-handed alpha
Helix 57	AG3	C	996	1001	Right-handed alpha
Helix 58	AG4	C	1002	1004	Right-handed 310
Helix 59	AG5	D	11	13	Right-handed 310
Helix 60	AG6	D	168	172	Right-handed 310
Helix 61	AG7	D	308	314	Right-handed alpha

There are 20 sheets in PDB entry 9JTS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	519	first strand
Strand 2	A	687	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	590	602	parallel
Strand 5	A	619	633	anti-parallel
Strand 6	A	653	658	anti-parallel
Strand 7	A	554	556	anti-parallel
Strand 8	A	535	536	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	517	519	first strand
Strand 2	A	687	691	anti-parallel
Strand 3	A	694	706	anti-parallel
Strand 4	A	590	602	parallel
Strand 5	A	619	633	anti-parallel
Strand 6	A	636	642	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2	5	first strand
Strand 2	B	343	349	anti-parallel
Strand 3	B	326	332	anti-parallel
Strand 4	B	318	321	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	24	first strand
Strand 2	B	27	33	anti-parallel
Strand 3	B	46	47	anti-parallel
Strand 4	B	58	59	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	80	first strand
Strand 2	B	90	97	anti-parallel
Strand 3	B	103	116	anti-parallel
Strand 4	B	119	127	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	131	first strand
Strand 2	B	191	195	parallel
Strand 3	B	182	186	anti-parallel
Strand 4	B	150	155	anti-parallel
Strand 5	B	142	147	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	159	161	first strand
Strand 2	B	175	177	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	211	first strand
Strand 2	B	215	219	anti-parallel
Strand 3	B	233	239	anti-parallel
Strand 4	B	246	251	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	267	first strand
Strand 2	B	270	274	anti-parallel
Strand 3	B	288	292	anti-parallel
Strand 4	B	297	301	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	632	anti-parallel
Strand 6	C	653	658	anti-parallel
Strand 7	C	554	556	anti-parallel
Strand 8	C	535	536	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	518	519	first strand
Strand 2	C	687	691	anti-parallel
Strand 3	C	694	706	anti-parallel
Strand 4	C	591	601	parallel
Strand 5	C	620	632	anti-parallel
Strand 6	C	637	642	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	5	first strand
Strand 2	D	343	349	anti-parallel
Strand 3	D	326	332	anti-parallel
Strand 4	D	318	321	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	7	8	first strand
Strand 2	D	54	59	parallel
Strand 3	D	46	51	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	24	first strand
Strand 2	D	27	33	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	61	62	first strand
Strand 2	D	119	122	parallel
Strand 3	D	112	116	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	78	first strand
Strand 2	D	91	97	anti-parallel
Strand 3	D	103	110	anti-parallel
Strand 4	D	125	127	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	131	first strand
Strand 2	D	191	195	parallel
Strand 3	D	182	186	anti-parallel
Strand 4	D	150	155	anti-parallel
Strand 5	D	142	147	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	161	first strand
Strand 2	D	175	177	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	215	219	anti-parallel
Strand 3	D	233	239	anti-parallel
Strand 4	D	246	251	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	267	first strand
Strand 2	D	270	274	anti-parallel
Strand 3	D	287	291	anti-parallel
Strand 4	D	298	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JTS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTS