Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JTT entry

There are 2 chains in PDB entry 9JTT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34ASN 511
B
 LEU 34ASN 511
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9JTT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 39Right-handed 310
Helix 2
AA2
A
50 55Right-handed alpha
Helix 3
AA3
A
66 75Right-handed alpha
Helix 4
AA4
A
76 79Right-handed 310
Helix 5
AA5
A
90 106Right-handed alpha
Helix 6
AA6
A
115 120Right-handed alpha
Helix 7
AA7
A
124 128Right-handed 310
Helix 8
AA8
A
130 147Right-handed alpha
Helix 9
AA9
A
161 169Right-handed alpha
Helix 10
AB1
A
170 174Right-handed 310
Helix 11
AB2
A
175 192Right-handed alpha
Helix 12
AB3
A
203 213Right-handed alpha
Helix 13
AB4
A
236 260Right-handed alpha
Helix 14
AB5
A
260 265Right-handed alpha
Helix 15
AB6
A
283 298Right-handed alpha
Helix 16
AB7
A
298 308Right-handed alpha
Helix 17
AB8
A
311 319Right-handed alpha
Helix 18
AB9
A
320 322Right-handed 310
Helix 19
AC1
A
326 334Right-handed alpha
Helix 20
AC2
A
363 368Right-handed alpha
Helix 21
AC3
A
394 409Right-handed alpha
Helix 22
AC4
A
431 436Right-handed 310
Helix 23
AC5
A
437 457Right-handed alpha
Helix 24
AC6
A
474 478Right-handed 310
Helix 25
AC7
A
499 511Right-handed alpha
Helix 26
AC8
B
35 39Right-handed 310
Helix 27
AC9
B
50 55Right-handed alpha
Helix 28
AD1
B
66 75Right-handed alpha
Helix 29
AD2
B
76 79Right-handed 310
Helix 30
AD3
B
90 106Right-handed alpha
Helix 31
AD4
B
115 120Right-handed alpha
Helix 32
AD5
B
124 128Right-handed 310
Helix 33
AD6
B
130 147Right-handed alpha
Helix 34
AD7
B
161 169Right-handed alpha
Helix 35
AD8
B
170 174Right-handed 310
Helix 36
AD9
B
175 192Right-handed alpha
Helix 37
AE1
B
203 213Right-handed alpha
Helix 38
AE2
B
236 260Right-handed alpha
Helix 39
AE3
B
260 265Right-handed alpha
Helix 40
AE4
B
283 298Right-handed alpha
Helix 41
AE5
B
298 308Right-handed alpha
Helix 42
AE6
B
311 319Right-handed alpha
Helix 43
AE7
B
320 322Right-handed 310
Helix 44
AE8
B
326 334Right-handed alpha
Helix 45
AE9
B
363 368Right-handed alpha
Helix 46
AF1
B
394 409Right-handed alpha
Helix 47
AF2
B
431 436Right-handed 310
Helix 48
AF3
B
437 457Right-handed alpha
Helix 49
AF4
B
474 478Right-handed 310
Helix 50
AF5
B
499 510Right-handed alpha
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There are 10 sheets in PDB entry 9JTT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 47first strand
Strand 2
A
109 113parallel
Strand 3
A
150 156parallel
Strand 4
A
197 202parallel
Strand 5
A
267 273parallel
Strand 6
A
340 343parallel
Strand 7
A
413 418parallel
Strand 8
A
461 466parallel
Strand 9
A
44 47parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
347 352parallel
Strand 3
A
370 373anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
383 384first strand
Strand 2
A
391 392anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 423first strand
Strand 2
A
481 482anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
486 488first strand
Strand 2
A
496 498anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 47first strand
Strand 2
B
109 113parallel
Strand 3
B
150 156parallel
Strand 4
B
197 202parallel
Strand 5
B
267 273parallel
Strand 6
B
340 343parallel
Strand 7
B
413 418parallel
Strand 8
B
461 466parallel
Strand 9
B
44 47parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
347 352parallel
Strand 3
B
370 373anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 376first strand
Strand 2
B
379 380anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 423first strand
Strand 2
B
481 482anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
486 488first strand
Strand 2
B
496 498anti-parallel
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