Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JTZ entry

There are 3 chains in PDB entry 9JTZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 915	HIS 1174
B	ARG 913	HIS 1174
C	ASN 914	GLU 1170

There are 31 helices in PDB entry 9JTZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	985	989	Right-handed 310
Helix 2	AA2	A	1026	1031	Right-handed alpha
Helix 3	AA3	A	1046	1057	Right-handed alpha
Helix 4	AA4	A	1071	1082	Right-handed alpha
Helix 5	AA5	A	1098	1113	Right-handed alpha
Helix 6	AA6	A	1124	1126	Right-handed 310
Helix 7	AA7	A	1127	1135	Right-handed alpha
Helix 8	AA8	A	1137	1139	Right-handed 310
Helix 9	AA9	A	1148	1152	Right-handed 310
Helix 10	AB1	A	1161	1171	Right-handed alpha
Helix 11	AB2	B	941	945	Right-handed 310
Helix 12	AB3	B	985	989	Right-handed 310
Helix 13	AB4	B	1026	1030	Right-handed alpha
Helix 14	AB5	B	1046	1057	Right-handed alpha
Helix 15	AB6	B	1068	1070	Right-handed 310
Helix 16	AB7	B	1071	1082	Right-handed alpha
Helix 17	AB8	B	1098	1115	Right-handed alpha
Helix 18	AB9	B	1124	1126	Right-handed 310
Helix 19	AC1	B	1127	1135	Right-handed alpha
Helix 20	AC2	B	1137	1139	Right-handed 310
Helix 21	AC3	B	1148	1152	Right-handed 310
Helix 22	AC4	B	1161	1171	Right-handed alpha
Helix 23	AC5	C	941	945	Right-handed 310
Helix 24	AC6	C	985	989	Right-handed 310
Helix 25	AC7	C	1046	1057	Right-handed alpha
Helix 26	AC8	C	1071	1082	Right-handed alpha
Helix 27	AC9	C	1101	1113	Right-handed alpha
Helix 28	AD1	C	1126	1134	Right-handed alpha
Helix 29	AD2	C	1137	1139	Right-handed 310
Helix 30	AD3	C	1151	1155	Right-handed 310
Helix 31	AD4	C	1161	1170	Right-handed alpha

There are 13 sheets in PDB entry 9JTZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	920	921	first strand
Strand 2	A	933	937	anti-parallel
Strand 3	A	979	983	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	924	927	first strand
Strand 2	A	1007	1015	parallel
Strand 3	A	993	1001	anti-parallel
Strand 4	A	952	957	anti-parallel
Strand 5	A	967	973	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	939	940	first strand
Strand 2	A	946	947	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1088	1092	first strand
Strand 2	A	1060	1068	parallel
Strand 3	A	1020	1025	parallel
Strand 4	A	1117	1123	parallel
Strand 5	A	1141	1144	parallel
Strand 6	A	1156	1158	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	920	921	first strand
Strand 2	B	933	937	anti-parallel
Strand 3	B	979	983	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	924	927	first strand
Strand 2	B	1007	1015	parallel
Strand 3	B	993	1001	anti-parallel
Strand 4	B	952	957	anti-parallel
Strand 5	B	967	973	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	939	940	first strand
Strand 2	B	946	947	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1088	1090	first strand
Strand 2	B	1060	1064	parallel
Strand 3	B	1020	1025	parallel
Strand 4	B	1117	1123	parallel
Strand 5	B	1141	1144	parallel
Strand 6	B	1156	1158	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1031	1032	first strand
Strand 2	B	1042	1043	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	920	921	first strand
Strand 2	C	933	937	anti-parallel
Strand 3	C	979	983	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	924	927	first strand
Strand 2	C	1007	1015	parallel
Strand 3	C	993	1001	anti-parallel
Strand 4	C	952	957	anti-parallel
Strand 5	C	967	973	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	939	940	first strand
Strand 2	C	946	947	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1088	1092	first strand
Strand 2	C	1060	1068	parallel
Strand 3	C	1020	1025	parallel
Strand 4	C	1117	1123	parallel
Strand 5	C	1141	1143	parallel
Strand 6	C	1156	1157	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JTZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JTZ