Analysis of interatomic Contacts of Structural Units in PDB entry:
9JU4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JU4 entry

There are 2 chains in PDB entry 9JU4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 310
B
 ARG 2LYS 64
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9JU4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 15Right-handed alpha
Helix 2
AA2
A
26 33Right-handed alpha
Helix 3
AA3
A
93 105Right-handed alpha
Helix 4
AA4
A
122 138Right-handed alpha
Helix 5
AA5
A
155 171Right-handed alpha
Helix 6
AA6
A
194 200Right-handed alpha
Helix 7
AA7
A
207 219Right-handed alpha
Helix 8
AA8
A
221 227Right-handed 310
Helix 9
AA9
A
231 235Right-handed 310
Helix 10
AB1
A
254 268Right-handed alpha
Helix 11
AB2
A
283 288Right-handed 310
Helix 12
AB3
A
291 310Right-handed alpha
Helix 13
AB4
B
30 32Right-handed 310
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There are 2 sheets in PDB entry 9JU4. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
58 66anti-parallel
Strand 3
A
107 111anti-parallel
Strand 4
A
74 80parallel
Strand 5
A
144 154parallel
Strand 6
A
179 182parallel
Strand 7
A
244 249parallel
Strand 8
A
272 277parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 9first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
25 28anti-parallel
Strand 4
B
59 64parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
3 9anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il