Analysis of interatomic Contacts of Structural Units in PDB entry:
9JU5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JU5 entry

There are 2 chains in PDB entry 9JU5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 15LEU 461
B
 MET 12LEU 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 9JU5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 57Right-handed alpha
Helix 2
AA2
A
58 76Right-handed alpha
Helix 3
AA3
A
76 89Right-handed alpha
Helix 4
AA4
A
91 113Right-handed alpha
Helix 5
AA5
A
148 163Right-handed alpha
Helix 6
AA6
A
176 190Right-handed alpha
Helix 7
AA7
A
201 210Right-handed alpha
Helix 8
AA8
A
221 232Right-handed alpha
Helix 9
AA9
A
256 267Right-handed alpha
Helix 10
AB1
A
268 271Right-handed 310
Helix 11
AB2
A
285 299Right-handed alpha
Helix 12
AB3
A
311 325Right-handed alpha
Helix 13
AB4
A
359 364Right-handed alpha
Helix 14
AB5
A
378 387Right-handed alpha
Helix 15
AB6
A
401 412Right-handed alpha
Helix 16
AB7
A
444 450Right-handed 310
Helix 17
AB8
B
36 57Right-handed alpha
Helix 18
AB9
B
58 76Right-handed alpha
Helix 19
AC1
B
76 89Right-handed alpha
Helix 20
AC2
B
91 113Right-handed alpha
Helix 21
AC3
B
148 163Right-handed alpha
Helix 22
AC4
B
176 190Right-handed alpha
Helix 23
AC5
B
201 210Right-handed alpha
Helix 24
AC6
B
221 232Right-handed alpha
Helix 25
AC7
B
256 267Right-handed alpha
Helix 26
AC8
B
268 271Right-handed 310
Helix 27
AC9
B
285 299Right-handed alpha
Helix 28
AD1
B
311 325Right-handed alpha
Helix 29
AD2
B
359 364Right-handed alpha
Helix 30
AD3
B
378 387Right-handed alpha
Helix 31
AD4
B
401 412Right-handed alpha
Helix 32
AD5
B
444 450Right-handed 310
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There are 8 sheets in PDB entry 9JU5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
28 34anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 136first strand
Strand 2
A
452 460anti-parallel
Strand 3
B
416 419parallel
Strand 4
B
394 398parallel
Strand 5
B
245 249parallel
Strand 6
B
276 282parallel
Strand 7
B
370 376parallel
Strand 8
B
350 353parallel
Strand 9
B
329 332anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
166 170parallel
Strand 3
A
139 143parallel
Strand 4
A
215 219parallel
Strand 5
A
236 240parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
329 332first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
370 376parallel
Strand 4
A
276 282parallel
Strand 5
A
245 249parallel
Strand 6
A
394 398parallel
Strand 7
A
416 419parallel
Strand 8
B
452 460parallel
Strand 9
B
128 136anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 392first strand
Strand 2
A
434 435anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
16 21first strand
Strand 2
B
28 34anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
166 170parallel
Strand 3
B
139 143parallel
Strand 4
B
215 219parallel
Strand 5
B
236 240parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
391 392first strand
Strand 2
B
434 435anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il