Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUB entry

There are 3 chains in PDB entry 9JUB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 37SER 442
B
 GLN 1SER 216
C
 ALA 1GLY 212
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JUB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
121 135Right-handed alpha
Helix 2
AA2
A
162 176Right-handed alpha
Helix 3
AA3
A
180 189Right-handed alpha
Helix 4
AA4
A
192 209Right-handed alpha
Helix 5
AA5
A
239 249Right-handed alpha
Helix 6
AA6
A
249 254Right-handed alpha
Helix 7
AA7
A
270 288Right-handed alpha
Helix 8
AA8
A
317 330Right-handed alpha
Helix 9
AA9
A
347 361Right-handed alpha
Helix 10
AB1
A
361 381Right-handed alpha
Helix 11
AB2
A
422 432Right-handed alpha
Helix 12
AB3
B
83 87Right-handed 310
Helix 13
AB4
B
161 163Right-handed 310
Helix 14
AB5
C
185 190Right-handed alpha
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There are 15 sheets in PDB entry 9JUB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 77first strand
Strand 2
A
50 54parallel
Strand 3
A
335 339parallel
Strand 4
A
301 304parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 91first strand
Strand 2
A
141 145parallel
Strand 3
A
214 218parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
101 102first strand
Strand 2
A
109 110anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
388 389first strand
Strand 2
A
433 434anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 409first strand
Strand 2
A
415 418anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 6first strand
Strand 2
B
16 24anti-parallel
Strand 3
B
74 80anti-parallel
Strand 4
B
67 70anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
112 116parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
33 38anti-parallel
Strand 5
B
44 50anti-parallel
Strand 6
B
56 58anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 11first strand
Strand 2
B
112 116parallel
Strand 3
B
88 95anti-parallel
Strand 4
B
105 108anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
140 148anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
169 170anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
125 129first strand
Strand 2
B
140 148anti-parallel
Strand 3
B
181 190anti-parallel
Strand 4
B
174 175anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 159first strand
Strand 2
B
196 202anti-parallel
Strand 3
B
207 213anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
105 108parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
45 48anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
16 24first strand
Strand 2
C
70 78anti-parallel
Strand 3
C
63 67anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 121first strand
Strand 2
C
132 142anti-parallel
Strand 3
C
175 184anti-parallel
Strand 4
C
161 165anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
147 152first strand
Strand 2
C
193 199anti-parallel
Strand 3
C
204 210anti-parallel
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