Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUK entry

There is 1 chain in PDB entry 9JUK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ARG 1264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 43 helices in PDB entry 9JUK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed 310
Helix 2
AA2
A
37 75Right-handed alpha
Helix 3
AA3
A
78 133Right-handed alpha
Helix 4
AA4
A
134 140Right-handed alpha
Helix 5
AA5
A
143 158Right-handed alpha
Helix 6
AA6
A
164 187Right-handed alpha
Helix 7
AA7
A
187 236Right-handed alpha
Helix 8
AA8
A
236 243Right-handed alpha
Helix 9
AA9
A
245 299Right-handed alpha
Helix 10
AB1
A
303 323Right-handed alpha
Helix 11
AB2
A
324 347Right-handed alpha
Helix 12
AB3
A
350 354Right-handed 310
Helix 13
AB4
A
409 417Right-handed alpha
Helix 14
AB5
A
440 446Right-handed alpha
Helix 15
AB6
A
461 466Right-handed alpha
Helix 16
AB7
A
472 483Right-handed alpha
Helix 17
AB8
A
486 491Right-handed alpha
Helix 18
AB9
A
509 523Right-handed alpha
Helix 19
AC1
A
539 547Right-handed alpha
Helix 20
AC2
A
678 693Right-handed alpha
Helix 21
AC3
A
696 729Right-handed alpha
Helix 22
AC4
A
732 786Right-handed alpha
Helix 23
AC5
A
788 794Right-handed alpha
Helix 24
AC6
A
795 797Right-handed 310
Helix 25
AC7
A
798 818Right-handed alpha
Helix 26
AC8
A
818 842Right-handed alpha
Helix 27
AC9
A
845 852Right-handed alpha
Helix 28
AD1
A
852 869Right-handed alpha
Helix 29
AD2
A
873 878Right-handed alpha
Helix 30
AD3
A
878 891Right-handed alpha
Helix 31
AD4
A
891 899Right-handed alpha
Helix 32
AD5
A
900 954Right-handed alpha
Helix 33
AD6
A
958 1001Right-handed alpha
Helix 34
AD7
A
1064 1066Right-handed 310
Helix 35
AD8
A
1067 1073Right-handed alpha
Helix 36
AD9
A
1094 1100Right-handed alpha
Helix 37
AE1
A
1115 1122Right-handed alpha
Helix 38
AE2
A
1129 1139Right-handed alpha
Helix 39
AE3
A
1142 1148Right-handed alpha
Helix 40
AE4
A
1164 1180Right-handed alpha
Helix 41
AE5
A
1194 1212Right-handed alpha
Helix 42
AE6
A
1250 1255Right-handed alpha
Helix 43
AE7
A
1255 1264Right-handed alpha
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There are 5 sheets in PDB entry 9JUK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 370first strand
Strand 2
A
427 429anti-parallel
Strand 3
A
432 433anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
557 558parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 578first strand
Strand 2
A
581 582anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1045 1049first strand
Strand 2
A
1024 1029anti-parallel
Strand 3
A
1082 1085anti-parallel
Strand 4
A
1088 1089anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1055first strand
Strand 2
A
1214 1215parallel
Strand 3
A
1183 1185parallel
Strand 4
A
1102 1104parallel
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