Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUL entry

There is 1 chain in PDB entry 9JUL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ARG 1264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9JUL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed 310
Helix 2
AA2
A
37 75Right-handed alpha
Helix 3
AA3
A
78 132Right-handed alpha
Helix 4
AA4
A
134 141Right-handed alpha
Helix 5
AA5
A
143 164Right-handed alpha
Helix 6
AA6
A
164 187Right-handed alpha
Helix 7
AA7
A
187 236Right-handed alpha
Helix 8
AA8
A
236 243Right-handed alpha
Helix 9
AA9
A
245 299Right-handed alpha
Helix 10
AB1
A
303 347Right-handed alpha
Helix 11
AB2
A
408 417Right-handed alpha
Helix 12
AB3
A
434 438Right-handed 310
Helix 13
AB4
A
441 446Right-handed alpha
Helix 14
AB5
A
459 466Right-handed alpha
Helix 15
AB6
A
472 483Right-handed alpha
Helix 16
AB7
A
509 522Right-handed alpha
Helix 17
AB8
A
538 552Right-handed alpha
Helix 18
AB9
A
564 571Right-handed alpha
Helix 19
AC1
A
577 581Right-handed 310
Helix 20
AC2
A
679 693Right-handed alpha
Helix 21
AC3
A
696 729Right-handed alpha
Helix 22
AC4
A
732 787Right-handed alpha
Helix 23
AC5
A
788 794Right-handed alpha
Helix 24
AC6
A
799 852Right-handed alpha
Helix 25
AC7
A
852 869Right-handed alpha
Helix 26
AC8
A
873 878Right-handed alpha
Helix 27
AC9
A
878 891Right-handed alpha
Helix 28
AD1
A
891 898Right-handed alpha
Helix 29
AD2
A
900 954Right-handed alpha
Helix 30
AD3
A
958 981Right-handed alpha
Helix 31
AD4
A
985 1001Right-handed alpha
Helix 32
AD5
A
1064 1073Right-handed alpha
Helix 33
AD6
A
1094 1100Right-handed alpha
Helix 34
AD7
A
1115 1122Right-handed alpha
Helix 35
AD8
A
1129 1139Right-handed alpha
Helix 36
AD9
A
1141 1148Right-handed alpha
Helix 37
AE1
A
1150 1154Right-handed 310
Helix 38
AE2
A
1164 1179Right-handed alpha
Helix 39
AE3
A
1194 1210Right-handed alpha
Helix 40
AE4
A
1234 1237Right-handed 310
Helix 41
AE5
A
1243 1250Right-handed alpha
Helix 42
AE6
A
1254 1264Right-handed alpha
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There are 3 sheets in PDB entry 9JUL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
447 448first strand
Strand 2
A
528 529parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1048first strand
Strand 2
A
1024 1031anti-parallel
Strand 3
A
1084 1085anti-parallel
Strand 4
A
1088 1089anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1102 1104first strand
Strand 2
A
1183 1186parallel
Strand 3
A
1213 1217parallel
Strand 4
A
1054 1058parallel
Strand 5
A
1229 1232parallel
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