Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUM entry

There is 1 chain in PDB entry 9JUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ARG 1264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 9JUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 34Right-handed 310
Helix 2
AA2
A
37 75Right-handed alpha
Helix 3
AA3
A
78 132Right-handed alpha
Helix 4
AA4
A
134 141Right-handed alpha
Helix 5
AA5
A
143 187Right-handed alpha
Helix 6
AA6
A
187 236Right-handed alpha
Helix 7
AA7
A
236 243Right-handed alpha
Helix 8
AA8
A
245 299Right-handed alpha
Helix 9
AA9
A
303 347Right-handed alpha
Helix 10
AB1
A
408 418Right-handed alpha
Helix 11
AB2
A
439 446Right-handed alpha
Helix 12
AB3
A
459 468Right-handed alpha
Helix 13
AB4
A
472 480Right-handed alpha
Helix 14
AB5
A
499 504Right-handed alpha
Helix 15
AB6
A
509 523Right-handed alpha
Helix 16
AB7
A
538 552Right-handed alpha
Helix 17
AB8
A
564 571Right-handed alpha
Helix 18
AB9
A
679 693Right-handed alpha
Helix 19
AC1
A
696 729Right-handed alpha
Helix 20
AC2
A
732 787Right-handed alpha
Helix 21
AC3
A
788 793Right-handed alpha
Helix 22
AC4
A
798 869Right-handed alpha
Helix 23
AC5
A
873 878Right-handed alpha
Helix 24
AC6
A
878 891Right-handed alpha
Helix 25
AC7
A
891 898Right-handed alpha
Helix 26
AC8
A
900 954Right-handed alpha
Helix 27
AC9
A
958 978Right-handed alpha
Helix 28
AD1
A
979 982Right-handed 310
Helix 29
AD2
A
985 1002Right-handed alpha
Helix 30
AD3
A
1064 1073Right-handed alpha
Helix 31
AD4
A
1094 1101Right-handed alpha
Helix 32
AD5
A
1115 1122Right-handed alpha
Helix 33
AD6
A
1129 1139Right-handed alpha
Helix 34
AD7
A
1141 1148Right-handed alpha
Helix 35
AD8
A
1150 1154Right-handed 310
Helix 36
AD9
A
1164 1180Right-handed alpha
Helix 37
AE1
A
1188 1191Right-handed 310
Helix 38
AE2
A
1194 1211Right-handed alpha
Helix 39
AE3
A
1234 1237Right-handed 310
Helix 40
AE4
A
1243 1250Right-handed alpha
Helix 41
AE5
A
1254 1264Right-handed alpha
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There are 3 sheets in PDB entry 9JUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
558 559first strand
Strand 2
A
399 403parallel
Strand 3
A
573 577parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1025 1027first strand
Strand 2
A
1082 1084anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1102 1105first strand
Strand 2
A
1183 1186parallel
Strand 3
A
1213 1217parallel
Strand 4
A
1054 1058parallel
Strand 5
A
1229 1232parallel
Strand 6
A
1241 1242anti-parallel
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