Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUN entry

There is 1 chain in PDB entry 9JUN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23ARG 1264
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9JUN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed 310
Helix 2
AA2
A
37 74Right-handed alpha
Helix 3
AA3
A
78 132Right-handed alpha
Helix 4
AA4
A
134 141Right-handed alpha
Helix 5
AA5
A
143 164Right-handed alpha
Helix 6
AA6
A
164 187Right-handed alpha
Helix 7
AA7
A
187 236Right-handed alpha
Helix 8
AA8
A
236 243Right-handed alpha
Helix 9
AA9
A
245 299Right-handed alpha
Helix 10
AB1
A
303 347Right-handed alpha
Helix 11
AB2
A
350 354Right-handed 310
Helix 12
AB3
A
406 417Right-handed alpha
Helix 13
AB4
A
438 443Right-handed alpha
Helix 14
AB5
A
444 446Right-handed 310
Helix 15
AB6
A
459 466Right-handed alpha
Helix 16
AB7
A
472 482Right-handed alpha
Helix 17
AB8
A
494 498Right-handed 310
Helix 18
AB9
A
511 523Right-handed alpha
Helix 19
AC1
A
538 550Right-handed alpha
Helix 20
AC2
A
566 571Right-handed alpha
Helix 21
AC3
A
577 581Right-handed 310
Helix 22
AC4
A
679 693Right-handed alpha
Helix 23
AC5
A
696 729Right-handed alpha
Helix 24
AC6
A
732 786Right-handed alpha
Helix 25
AC7
A
788 794Right-handed alpha
Helix 26
AC8
A
798 852Right-handed alpha
Helix 27
AC9
A
852 869Right-handed alpha
Helix 28
AD1
A
873 878Right-handed alpha
Helix 29
AD2
A
878 891Right-handed alpha
Helix 30
AD3
A
891 898Right-handed alpha
Helix 31
AD4
A
900 954Right-handed alpha
Helix 32
AD5
A
958 1001Right-handed alpha
Helix 33
AD6
A
1065 1073Right-handed alpha
Helix 34
AD7
A
1085 1088Right-handed 310
Helix 35
AD8
A
1094 1100Right-handed alpha
Helix 36
AD9
A
1115 1122Right-handed alpha
Helix 37
AE1
A
1128 1139Right-handed alpha
Helix 38
AE2
A
1141 1148Right-handed alpha
Helix 39
AE3
A
1150 1154Right-handed 310
Helix 40
AE4
A
1164 1180Right-handed alpha
Helix 41
AE5
A
1194 1210Right-handed alpha
Helix 42
AE6
A
1257 1264Right-handed alpha
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There are 5 sheets in PDB entry 9JUN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
369 370first strand
Strand 2
A
427 429anti-parallel
Strand 3
A
432 433anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
529 530first strand
Strand 2
A
557 558parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1048 1049first strand
Strand 2
A
1024 1027anti-parallel
Strand 3
A
1082 1083anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1029 1031first strand
Strand 2
A
1041 1045anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1055first strand
Strand 2
A
1214 1215parallel
Strand 3
A
1183 1185parallel
Strand 4
A
1102 1104parallel
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