Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUP entry

There is 1 chain in PDB entry 9JUP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 23SER 1243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 42 helices in PDB entry 9JUP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 34Right-handed 310
Helix 2
AA2
A
37 74Right-handed alpha
Helix 3
AA3
A
82 132Right-handed alpha
Helix 4
AA4
A
134 139Right-handed alpha
Helix 5
AA5
A
143 163Right-handed alpha
Helix 6
AA6
A
163 187Right-handed alpha
Helix 7
AA7
A
187 195Right-handed alpha
Helix 8
AA8
A
197 236Right-handed alpha
Helix 9
AA9
A
236 243Right-handed alpha
Helix 10
AB1
A
245 299Right-handed alpha
Helix 11
AB2
A
303 324Right-handed alpha
Helix 12
AB3
A
324 346Right-handed alpha
Helix 13
AB4
A
409 417Right-handed alpha
Helix 14
AB5
A
433 437Right-handed 310
Helix 15
AB6
A
438 445Right-handed alpha
Helix 16
AB7
A
459 466Right-handed alpha
Helix 17
AB8
A
472 483Right-handed alpha
Helix 18
AB9
A
485 491Right-handed alpha
Helix 19
AC1
A
494 498Right-handed 310
Helix 20
AC2
A
508 523Right-handed alpha
Helix 21
AC3
A
538 553Right-handed alpha
Helix 22
AC4
A
564 571Right-handed alpha
Helix 23
AC5
A
685 693Right-handed alpha
Helix 24
AC6
A
696 728Right-handed alpha
Helix 25
AC7
A
732 787Right-handed alpha
Helix 26
AC8
A
788 793Right-handed alpha
Helix 27
AC9
A
798 816Right-handed alpha
Helix 28
AD1
A
820 841Right-handed alpha
Helix 29
AD2
A
844 870Right-handed alpha
Helix 30
AD3
A
874 891Right-handed alpha
Helix 31
AD4
A
891 898Right-handed alpha
Helix 32
AD5
A
900 954Right-handed alpha
Helix 33
AD6
A
959 981Right-handed alpha
Helix 34
AD7
A
982 1002Right-handed alpha
Helix 35
AD8
A
1064 1073Right-handed alpha
Helix 36
AD9
A
1094 1100Right-handed alpha
Helix 37
AE1
A
1115 1122Right-handed alpha
Helix 38
AE2
A
1129 1139Right-handed alpha
Helix 39
AE3
A
1141 1148Right-handed alpha
Helix 40
AE4
A
1150 1154Right-handed 310
Helix 41
AE5
A
1164 1180Right-handed alpha
Helix 42
AE6
A
1194 1209Right-handed alpha
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There are 5 sheets in PDB entry 9JUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 393first strand
Strand 2
A
368 376anti-parallel
Strand 3
A
426 429anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 449first strand
Strand 2
A
527 531parallel
Strand 3
A
557 561parallel
Strand 4
A
398 403parallel
Strand 5
A
573 577parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1042 1048first strand
Strand 2
A
1024 1031anti-parallel
Strand 3
A
1082 1085anti-parallel
Strand 4
A
1088 1089anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1055 1058first strand
Strand 2
A
1229 1234parallel
Strand 3
A
1237 1238anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1102 1103first strand
Strand 2
A
1183 1184parallel
Strand 3
A
1213 1214parallel
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