Analysis of interatomic Contacts of Structural Units in PDB entry:
9JUQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JUQ entry

There is 1 chain in PDB entry 9JUQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 26ASN 631
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9JUQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 63Right-handed alpha
Helix 2
AA2
A
77 91Right-handed alpha
Helix 3
AA3
A
92 94Right-handed 310
Helix 4
AA4
A
96 122Right-handed alpha
Helix 5
AA5
A
170 184Right-handed alpha
Helix 6
AA6
A
187 198Right-handed alpha
Helix 7
AA7
A
203 215Right-handed alpha
Helix 8
AA8
A
217 230Right-handed alpha
Helix 9
AA9
A
256 273Right-handed alpha
Helix 10
AB1
A
274 277Right-handed 310
Helix 11
AB2
A
308 314Right-handed alpha
Helix 12
AB3
A
314 324Right-handed alpha
Helix 13
AB4
A
325 336Right-handed alpha
Helix 14
AB5
A
338 348Right-handed alpha
Helix 15
AB6
A
348 358Right-handed alpha
Helix 16
AB7
A
360 371Right-handed alpha
Helix 17
AB8
A
371 390Right-handed alpha
Helix 18
AB9
A
396 411Right-handed alpha
Helix 19
AC1
A
412 417Right-handed 310
Helix 20
AC2
A
468 473Right-handed alpha
Helix 21
AC3
A
511 513Right-handed 310
Helix 22
AC4
A
514 530Right-handed alpha
Helix 23
AC5
A
532 543Right-handed alpha
Helix 24
AC6
A
548 564Right-handed alpha
Helix 25
AC7
A
566 577Right-handed alpha
Helix 26
AC8
A
598 631Right-handed alpha
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There are 2 sheets in PDB entry 9JUQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
465 466first strand
Strand 2
A
458 460anti-parallel
Strand 3
A
502 504anti-parallel
Strand 4
A
488 489anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
582 583first strand
Strand 2
A
594 596anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il