Analysis of interatomic Contacts of Structural Units in PDB entry:
9JV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JV6 entry

There are 3 chains in PDB entry 9JV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	PHE 491
B	ARG 4	PHE 491
C	GLN 3	LYS 347

There are 69 helices in PDB entry 9JV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	47	68	Right-handed alpha
Helix 2	AA2	A	69	87	Right-handed alpha
Helix 3	AA3	A	87	100	Right-handed alpha
Helix 4	AA4	A	102	121	Right-handed alpha
Helix 5	AA5	A	122	127	Right-handed alpha
Helix 6	AA6	A	159	174	Right-handed alpha
Helix 7	AA7	A	191	201	Right-handed alpha
Helix 8	AA8	A	214	225	Right-handed alpha
Helix 9	AA9	A	236	250	Right-handed alpha
Helix 10	AB1	A	273	287	Right-handed alpha
Helix 11	AB2	A	288	291	Right-handed 310
Helix 12	AB3	A	303	318	Right-handed alpha
Helix 13	AB4	A	337	354	Right-handed alpha
Helix 14	AB5	A	381	386	Right-handed alpha
Helix 15	AB6	A	400	410	Right-handed alpha
Helix 16	AB7	A	423	433	Right-handed alpha
Helix 17	AB8	A	466	474	Right-handed alpha
Helix 18	AB9	B	47	68	Right-handed alpha
Helix 19	AC1	B	69	87	Right-handed alpha
Helix 20	AC2	B	87	100	Right-handed alpha
Helix 21	AC3	B	102	121	Right-handed alpha
Helix 22	AC4	B	122	127	Right-handed alpha
Helix 23	AC5	B	159	174	Right-handed alpha
Helix 24	AC6	B	191	201	Right-handed alpha
Helix 25	AC7	B	214	225	Right-handed alpha
Helix 26	AC8	B	236	250	Right-handed alpha
Helix 27	AC9	B	273	287	Right-handed alpha
Helix 28	AD1	B	288	291	Right-handed 310
Helix 29	AD2	B	303	318	Right-handed alpha
Helix 30	AD3	B	337	354	Right-handed alpha
Helix 31	AD4	B	381	386	Right-handed alpha
Helix 32	AD5	B	400	409	Right-handed alpha
Helix 33	AD6	B	423	433	Right-handed alpha
Helix 34	AD7	B	466	474	Right-handed alpha
Helix 35	AD8	C	47	68	Right-handed alpha
Helix 36	AD9	C	69	87	Right-handed alpha
Helix 37	AE1	C	87	100	Right-handed alpha
Helix 38	AE2	C	102	121	Right-handed alpha
Helix 39	AE3	C	122	127	Right-handed alpha
Helix 40	AE4	C	159	174	Right-handed alpha
Helix 41	AE5	C	191	202	Right-handed alpha
Helix 42	AE6	C	214	225	Right-handed alpha
Helix 43	AE7	C	236	250	Right-handed alpha
Helix 44	AE8	C	273	287	Right-handed alpha
Helix 45	AE9	C	288	291	Right-handed 310
Helix 46	AF1	C	303	318	Right-handed alpha
Helix 47	AF2	C	337	354	Right-handed alpha
Helix 48	AF3	C	381	386	Right-handed alpha
Helix 49	AF4	C	400	409	Right-handed alpha
Helix 50	AF5	C	423	434	Right-handed alpha
Helix 51	AF6	C	466	474	Right-handed alpha
Helix 52	AF7	D	47	68	Right-handed alpha
Helix 53	AF8	D	69	87	Right-handed alpha
Helix 54	AF9	D	87	100	Right-handed alpha
Helix 55	AG1	D	102	121	Right-handed alpha
Helix 56	AG2	D	122	127	Right-handed alpha
Helix 57	AG3	D	159	174	Right-handed alpha
Helix 58	AG4	D	191	201	Right-handed alpha
Helix 59	AG5	D	214	225	Right-handed alpha
Helix 60	AG6	D	236	250	Right-handed alpha
Helix 61	AG7	D	273	287	Right-handed alpha
Helix 62	AG8	D	288	291	Right-handed 310
Helix 63	AG9	D	303	319	Right-handed alpha
Helix 64	AH1	D	337	355	Right-handed alpha
Helix 65	AH2	D	381	386	Right-handed alpha
Helix 66	AH3	D	400	410	Right-handed alpha
Helix 67	AH4	D	423	433	Right-handed alpha
Helix 68	AH5	D	457	459	Right-handed 310
Helix 69	AH6	D	466	474	Right-handed alpha

There are 17 sheets in PDB entry 9JV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	14	16	first strand
Strand 2	A	19	21	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	39	44	anti-parallel

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There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	357	360	first strand
Strand 2	B	372	377	anti-parallel
Strand 3	B	392	398	parallel
Strand 4	B	296	302	parallel
Strand 5	B	264	268	parallel
Strand 6	B	418	420	parallel
Strand 7	B	438	441	parallel
Strand 8	A	475	483	parallel
Strand 9	A	139	147	anti-parallel
Strand 10	A	129	132	anti-parallel
Strand 11	D	128	132	anti-parallel
Strand 12	D	139	147	anti-parallel
Strand 13	D	475	483	anti-parallel
Strand 14	C	438	441	parallel
Strand 15	C	418	420	parallel
Strand 16	C	264	268	parallel
Strand 17	C	296	302	parallel
Strand 18	C	392	398	parallel
Strand 19	C	372	377	parallel
Strand 20	C	357	360	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	177	181	parallel
Strand 3	A	150	154	parallel
Strand 4	A	230	234	parallel
Strand 5	A	255	259	parallel
Strand 6	A	461	462	anti-parallel

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There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	357	360	first strand
Strand 2	A	372	377	anti-parallel
Strand 3	A	392	398	parallel
Strand 4	A	296	302	parallel
Strand 5	A	264	268	parallel
Strand 6	A	418	420	parallel
Strand 7	A	438	441	parallel
Strand 8	B	475	483	parallel
Strand 9	B	139	147	anti-parallel
Strand 10	B	129	132	anti-parallel
Strand 11	C	129	132	anti-parallel
Strand 12	C	139	147	anti-parallel
Strand 13	C	475	483	anti-parallel
Strand 14	D	438	441	parallel
Strand 15	D	418	420	parallel
Strand 16	D	264	268	parallel
Strand 17	D	296	302	parallel
Strand 18	D	392	398	parallel
Strand 19	D	372	377	parallel
Strand 20	D	357	360	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	413	414	first strand
Strand 2	A	457	458	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	16	first strand
Strand 2	B	19	21	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	39	44	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	177	181	parallel
Strand 3	B	150	154	parallel
Strand 4	B	230	234	parallel
Strand 5	B	255	259	parallel
Strand 6	B	461	462	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	413	414	first strand
Strand 2	B	457	458	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	14	16	first strand
Strand 2	C	19	21	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	32	first strand
Strand 2	C	39	44	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	177	181	parallel
Strand 3	C	150	154	parallel
Strand 4	C	230	234	parallel
Strand 5	C	255	259	parallel
Strand 6	C	461	462	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	413	414	first strand
Strand 2	C	457	458	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	14	16	first strand
Strand 2	D	19	21	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	33	first strand
Strand 2	D	38	44	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	177	181	parallel
Strand 3	D	150	154	parallel
Strand 4	D	230	234	parallel
Strand 5	D	255	259	parallel
Strand 6	D	461	462	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JV6