Analysis of interatomic Contacts of Structural Units in PDB entry:
9JV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JV8 entry

There is 1 chain in PDB entry 9JV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 34SER 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9JV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 47Right-handed alpha
Helix 2
AA2
A
90 106Right-handed alpha
Helix 3
AA3
A
121 127Right-handed 310
Helix 4
AA4
A
140 165Right-handed alpha
Helix 5
AA5
A
169 178Right-handed alpha
Helix 6
AA6
A
182 187Right-handed 310
Helix 7
AA7
A
198 206Right-handed alpha
Helix 8
AA8
A
208 220Right-handed alpha
Helix 9
AA9
A
221 223Right-handed 310
Helix 10
AB1
A
233 237Right-handed 310
Helix 11
AB2
A
238 243Right-handed alpha
Helix 12
AB3
A
255 259Right-handed 310
Helix 13
AB4
A
262 268Right-handed 310
Helix 14
AB5
A
299 312Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 9JV8.

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
66 73first strand
Strand 2
A
53 61anti-parallel
Strand 3
A
283 286anti-parallel
Strand 4
A
275 277anti-parallel
Strand 5
A
247 251anti-parallel
Strand 6
A
81 84parallel
Strand 7
A
225 231parallel
Strand 8
A
191 197parallel
Strand 9
A
111 117parallel
Strand 10
A
132 137parallel
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