Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JVD entry

There are 4 chains in PDB entry 9JVD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 156PRO 254
B
 MET 154GLU 257
C
 HIS 158ARG 246
D
 SER 155SER 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 9JVD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
161 178Right-handed alpha
Helix 2
AA2
A
180 191Right-handed alpha
Helix 3
AA3
A
197 205Right-handed alpha
Helix 4
AA4
A
205 214Right-handed alpha
Helix 5
AA5
A
215 221Right-handed 310
Helix 6
AA6
A
222 234Right-handed alpha
Helix 7
AA7
A
235 237Right-handed 310
Helix 8
AA8
A
238 247Right-handed alpha
Helix 9
AA9
B
161 178Right-handed alpha
Helix 10
AB1
B
180 191Right-handed alpha
Helix 11
AB2
B
197 205Right-handed alpha
Helix 12
AB3
B
205 213Right-handed alpha
Helix 13
AB4
B
214 221Right-handed 310
Helix 14
AB5
B
222 235Right-handed alpha
Helix 15
AB6
B
238 251Right-handed alpha
Helix 16
AB7
C
161 178Right-handed alpha
Helix 17
AB8
C
180 192Right-handed alpha
Helix 18
AB9
C
197 205Right-handed alpha
Helix 19
AC1
C
205 214Right-handed alpha
Helix 20
AC2
C
215 221Right-handed 310
Helix 21
AC3
C
222 235Right-handed alpha
Helix 22
AC4
C
238 246Right-handed alpha
Helix 23
AC5
D
161 179Right-handed alpha
Helix 24
AC6
D
180 192Right-handed alpha
Helix 25
AC7
D
197 205Right-handed alpha
Helix 26
AC8
D
205 214Right-handed alpha
Helix 27
AC9
D
215 221Right-handed 310
Helix 28
AD1
D
222 235Right-handed alpha
Helix 29
AD2
D
238 247Right-handed alpha
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There are no sheets in PDB entry 9JVD
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