Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JVJ entry

There are 2 chains in PDB entry 9JVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 378
B
 MET 1HIS 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 12Right-handed alpha
Helix 2
AA2
A
13 24Right-handed alpha
Helix 3
AA3
A
30 32Right-handed 310
Helix 4
AA4
A
39 49Right-handed alpha
Helix 5
AA5
A
56 61Right-handed 310
Helix 6
AA6
A
65 69Right-handed 310
Helix 7
AA7
A
70 74Right-handed 310
Helix 8
AA8
A
77 92Right-handed alpha
Helix 9
AA9
A
94 113Right-handed alpha
Helix 10
AB1
A
124 138Right-handed alpha
Helix 11
AB2
A
144 159Right-handed alpha
Helix 12
AB3
A
164 166Right-handed 310
Helix 13
AB4
A
167 187Right-handed alpha
Helix 14
AB5
A
207 239Right-handed alpha
Helix 15
AB6
A
251 263Right-handed alpha
Helix 16
AB7
A
292 297Right-handed alpha
Helix 17
AB8
A
330 348Right-handed alpha
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There are 4 sheets in PDB entry 9JVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 29first strand
Strand 2
A
34 37anti-parallel
Strand 3
A
288 291parallel
Strand 4
A
268 272anti-parallel
Strand 5
A
53 54anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 119first strand
Strand 2
A
372 377anti-parallel
Strand 3
A
349 353anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 278first strand
Strand 2
A
281 283anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 359first strand
Strand 2
A
368 370anti-parallel
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