Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JVQ entry

There are 6 chains in PDB entry 9JVQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ALA 283
B	SER 2	ALA 283
C	SER 2	ALA 283
D	SER 2	ALA 283
E	SER 2	ALA 283
F	SER 2	ALA 283

There are 11 helices in PDB entry 9JVQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	5	9	Right-handed 310
Helix 2	AA2	A	10	18	Right-handed alpha
Helix 3	AA3	B	5	9	Right-handed 310
Helix 4	AA4	B	10	18	Right-handed alpha
Helix 5	AA5	C	10	17	Right-handed alpha
Helix 6	AA6	D	5	9	Right-handed 310
Helix 7	AA7	D	10	18	Right-handed alpha
Helix 8	AA8	E	5	9	Right-handed 310
Helix 9	AA9	E	10	15	Right-handed alpha
Helix 10	AB1	F	5	9	Right-handed 310
Helix 11	AB2	F	10	15	Right-handed alpha

There are 6 sheets in PDB entry 9JVQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	164	first strand
Strand 2	A	147	156	anti-parallel
Strand 3	A	166	171	anti-parallel
Strand 4	A	176	183	anti-parallel
Strand 5	A	187	197	anti-parallel
Strand 6	A	200	209	anti-parallel
Strand 7	A	217	225	anti-parallel
Strand 8	A	231	238	anti-parallel
Strand 9	A	242	250	anti-parallel
Strand 10	A	255	264	anti-parallel
Strand 11	A	274	282	anti-parallel
Strand 12	A	27	33	parallel
Strand 13	A	41	47	anti-parallel
Strand 14	A	55	64	anti-parallel
Strand 15	A	69	76	anti-parallel
Strand 16	A	81	87	anti-parallel
Strand 17	A	94	102	anti-parallel
Strand 18	A	109	118	anti-parallel
Strand 19	A	121	129	anti-parallel
Strand 20	A	135	143	anti-parallel
Strand 21	A	147	156	anti-parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	34	first strand
Strand 2	B	39	45	anti-parallel
Strand 3	B	56	62	anti-parallel
Strand 4	B	70	75	anti-parallel
Strand 5	B	84	86	anti-parallel
Strand 6	B	94	100	anti-parallel
Strand 7	B	110	118	anti-parallel
Strand 8	B	121	129	anti-parallel
Strand 9	B	135	144	anti-parallel
Strand 10	B	147	156	anti-parallel
Strand 11	B	166	172	anti-parallel
Strand 12	B	176	183	anti-parallel
Strand 13	B	187	197	anti-parallel
Strand 14	B	200	207	anti-parallel
Strand 15	B	218	225	anti-parallel
Strand 16	B	231	238	anti-parallel
Strand 17	B	243	250	anti-parallel
Strand 18	B	255	262	anti-parallel
Strand 19	B	275	282	anti-parallel
Strand 20	B	29	34	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	34	first strand
Strand 2	C	40	46	anti-parallel
Strand 3	C	55	63	anti-parallel
Strand 4	C	70	76	anti-parallel
Strand 5	C	84	91	anti-parallel
Strand 6	C	94	100	anti-parallel
Strand 7	C	110	118	anti-parallel
Strand 8	C	121	126	anti-parallel
Strand 9	C	135	144	anti-parallel
Strand 10	C	147	156	anti-parallel
Strand 11	C	162	171	anti-parallel
Strand 12	C	176	182	anti-parallel
Strand 13	C	189	197	anti-parallel
Strand 14	C	200	207	anti-parallel
Strand 15	C	218	225	anti-parallel
Strand 16	C	231	238	anti-parallel
Strand 17	C	242	252	anti-parallel
Strand 18	C	255	264	anti-parallel
Strand 19	C	275	282	anti-parallel
Strand 20	C	28	34	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	34	first strand
Strand 2	D	39	45	anti-parallel
Strand 3	D	56	62	anti-parallel
Strand 4	D	70	75	anti-parallel
Strand 5	D	82	86	anti-parallel
Strand 6	D	95	99	anti-parallel
Strand 7	D	111	118	anti-parallel
Strand 8	D	121	128	anti-parallel
Strand 9	D	135	144	anti-parallel
Strand 10	D	147	156	anti-parallel
Strand 11	D	162	172	anti-parallel
Strand 12	D	176	183	anti-parallel
Strand 13	D	187	197	anti-parallel
Strand 14	D	200	207	anti-parallel
Strand 15	D	218	225	anti-parallel
Strand 16	D	231	238	anti-parallel
Strand 17	D	243	250	anti-parallel
Strand 18	D	256	262	anti-parallel
Strand 19	D	274	282	anti-parallel
Strand 20	D	27	34	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	27	33	first strand
Strand 2	E	40	47	anti-parallel
Strand 3	E	55	62	anti-parallel
Strand 4	E	70	76	anti-parallel
Strand 5	E	81	86	anti-parallel
Strand 6	E	95	102	anti-parallel
Strand 7	E	111	118	anti-parallel
Strand 8	E	121	126	anti-parallel
Strand 9	E	135	144	anti-parallel
Strand 10	E	147	156	anti-parallel
Strand 11	E	162	172	anti-parallel
Strand 12	E	176	183	anti-parallel
Strand 13	E	187	197	anti-parallel
Strand 14	E	200	207	anti-parallel
Strand 15	E	219	225	anti-parallel
Strand 16	E	231	238	anti-parallel
Strand 17	E	242	252	anti-parallel
Strand 18	E	255	264	anti-parallel
Strand 19	E	276	280	anti-parallel
Strand 20	E	27	33	parallel

Back to list of sheets
Back to top of page

There are 20 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	33	first strand
Strand 2	F	40	46	anti-parallel
Strand 3	F	55	62	anti-parallel
Strand 4	F	70	76	anti-parallel
Strand 5	F	81	86	anti-parallel
Strand 6	F	95	102	anti-parallel
Strand 7	F	111	118	anti-parallel
Strand 8	F	121	128	anti-parallel
Strand 9	F	135	144	anti-parallel
Strand 10	F	147	156	anti-parallel
Strand 11	F	162	171	anti-parallel
Strand 12	F	176	183	anti-parallel
Strand 13	F	187	197	anti-parallel
Strand 14	F	200	207	anti-parallel
Strand 15	F	219	225	anti-parallel
Strand 16	F	231	238	anti-parallel
Strand 17	F	242	250	anti-parallel
Strand 18	F	256	264	anti-parallel
Strand 19	F	274	280	anti-parallel
Strand 20	F	28	33	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JVQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVQ