Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JVR entry

There are 8 chains in PDB entry 9JVR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1PHE 64
A
 VAL 68PRO 230
B
 ALA 1PHE 64
B
 VAL 68PRO 230
C
 ALA 1PHE 64
C
 VAL 68PRO 230
D
 ALA 1PHE 64
D
 VAL 68PRO 230
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9JVR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 9Right-handed 310
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
68 72Right-handed 310
Helix 4
AA4
A
75 81Right-handed 310
Helix 5
AA5
A
82 87Right-handed alpha
Helix 6
AA6
B
5 9Right-handed 310
Helix 7
AA7
B
56 61Right-handed 310
Helix 8
AA8
B
68 72Right-handed 310
Helix 9
AA9
B
75 81Right-handed 310
Helix 10
AB1
B
82 87Right-handed alpha
Helix 11
AB2
C
4 9Right-handed 310
Helix 12
AB3
C
56 61Right-handed 310
Helix 13
AB4
C
68 72Right-handed 310
Helix 14
AB5
C
75 81Right-handed 310
Helix 15
AB6
C
82 87Right-handed alpha
Helix 16
AB7
D
4 9Right-handed 310
Helix 17
AB8
D
56 61Right-handed 310
Helix 18
AB9
D
68 72Right-handed 310
Helix 19
AC1
D
75 81Right-handed 310
Helix 20
AC2
D
82 87Right-handed alpha
Helix 21
AC3
D
156 159Right-handed 310
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There are 4 sheets in PDB entry 9JVR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
168 171anti-parallel
Strand 3
A
176 187anti-parallel
Strand 4
A
160 165anti-parallel
Strand 5
A
148 155anti-parallel
Strand 6
A
199 208anti-parallel
Strand 7
A
217 228anti-parallel
Strand 8
A
41 48anti-parallel
Strand 9
A
25 36anti-parallel
Strand 10
A
12 22anti-parallel
Strand 11
A
118 128parallel
Strand 12
A
105 115anti-parallel
Strand 13
A
92 100anti-parallel
Strand 14
A
176 187anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
142 143first strand
Strand 2
B
160 170anti-parallel
Strand 3
B
176 187anti-parallel
Strand 4
B
92 100anti-parallel
Strand 5
B
105 115anti-parallel
Strand 6
B
118 128anti-parallel
Strand 7
B
11 22parallel
Strand 8
B
25 36anti-parallel
Strand 9
B
41 48anti-parallel
Strand 10
B
217 228anti-parallel
Strand 11
B
199 208anti-parallel
Strand 12
B
148 155anti-parallel
Strand 13
B
160 170anti-parallel
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There are 13 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 170first strand
Strand 2
C
176 187anti-parallel
Strand 3
C
160 165anti-parallel
Strand 4
C
148 155anti-parallel
Strand 5
C
199 208anti-parallel
Strand 6
C
217 228anti-parallel
Strand 7
C
41 48anti-parallel
Strand 8
C
25 36anti-parallel
Strand 9
C
12 22anti-parallel
Strand 10
C
118 128parallel
Strand 11
C
105 115anti-parallel
Strand 12
C
92 100anti-parallel
Strand 13
C
176 187anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
141 143first strand
Strand 2
D
160 171anti-parallel
Strand 3
D
176 187anti-parallel
Strand 4
D
92 100anti-parallel
Strand 5
D
105 115anti-parallel
Strand 6
D
118 128anti-parallel
Strand 7
D
11 22parallel
Strand 8
D
25 36anti-parallel
Strand 9
D
41 48anti-parallel
Strand 10
D
217 228anti-parallel
Strand 11
D
199 208anti-parallel
Strand 12
D
148 155anti-parallel
Strand 13
D
160 171anti-parallel
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