Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JVT entry

There are 6 chains in PDB entry 9JVT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
v	THR 376	PHE 824
g	ASP 1	GLU 72
g	GLY 74	SER 368
V	ILE 370	GLN 750
G	ASP 3	GLU 72
G	GLY 74	ALA 114

There are 59 helices in PDB entry 9JVT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	v	380	385	Right-handed alpha
Helix 2	AA2	v	417	421	Right-handed 310
Helix 3	AA3	v	455	473	Right-handed alpha
Helix 4	AA4	v	488	495	Right-handed alpha
Helix 5	AA5	v	569	581	Right-handed alpha
Helix 6	AA6	v	596	601	Right-handed alpha
Helix 7	AA7	v	612	617	Right-handed alpha
Helix 8	AA8	v	646	650	Right-handed 310
Helix 9	AA9	v	673	690	Right-handed alpha
Helix 10	AB1	v	730	739	Right-handed alpha
Helix 11	AB2	v	767	772	Right-handed alpha
Helix 12	AB3	v	791	799	Right-handed alpha
Helix 13	AB4	v	802	809	Right-handed alpha
Helix 14	AB5	v	810	821	Right-handed alpha
Helix 15	AB6	g	56	58	Right-handed 310
Helix 16	AB7	g	80	92	Right-handed alpha
Helix 17	AB8	g	112	127	Right-handed alpha
Helix 18	AB9	g	137	146	Right-handed alpha
Helix 19	AC1	g	181	196	Right-handed alpha
Helix 20	AC2	g	204	217	Right-handed alpha
Helix 21	AC3	g	222	232	Right-handed alpha
Helix 22	AC4	g	252	260	Right-handed alpha
Helix 23	AC5	g	261	262	Right-handed 310
Helix 24	AC6	g	263	267	Right-handed 310
Helix 25	AC7	g	273	284	Right-handed alpha
Helix 26	AC8	g	286	295	Right-handed alpha
Helix 27	AC9	g	301	305	Right-handed 310
Helix 28	AD1	g	308	321	Right-handed alpha
Helix 29	AD2	g	337	348	Right-handed alpha
Helix 30	AD3	g	359	366	Right-handed alpha
Helix 31	AD4	V	380	385	Right-handed alpha
Helix 32	AD5	V	417	421	Right-handed 310
Helix 33	AD6	V	455	474	Right-handed alpha
Helix 34	AD7	V	488	493	Right-handed alpha
Helix 35	AD8	V	494	496	Right-handed 310
Helix 36	AD9	V	542	546	Right-handed 310
Helix 37	AE1	V	569	581	Right-handed alpha
Helix 38	AE2	V	596	601	Right-handed alpha
Helix 39	AE3	V	612	616	Right-handed 310
Helix 40	AE4	V	673	690	Right-handed alpha
Helix 41	AE5	V	712	717	Right-handed alpha
Helix 42	AE6	V	730	739	Right-handed alpha
Helix 43	AE7	G	55	61	Right-handed alpha
Helix 44	AE8	G	78	91	Right-handed alpha
Helix 45	AE9	G	112	125	Right-handed alpha
Helix 46	AF1	G	137	146	Right-handed alpha
Helix 47	AF2	G	181	196	Right-handed alpha
Helix 48	AF3	G	204	217	Right-handed alpha
Helix 49	AF4	G	222	232	Right-handed alpha
Helix 50	AF5	G	252	260	Right-handed alpha
Helix 51	AF6	G	261	262	Right-handed 310
Helix 52	AF7	G	263	267	Right-handed 310
Helix 53	AF8	G	273	284	Right-handed alpha
Helix 54	AF9	G	286	295	Right-handed alpha
Helix 55	AG1	G	301	305	Right-handed 310
Helix 56	AG2	G	308	321	Right-handed alpha
Helix 57	AG3	G	337	348	Right-handed alpha
Helix 58	AG4	G	359	366	Right-handed alpha
Helix 59	AG5	G	368	373	Right-handed alpha

There are 16 sheets in PDB entry 9JVT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	412	415	first strand
Strand 2	v	402	409	anti-parallel
Strand 3	v	430	437	anti-parallel
Strand 4	v	442	450	anti-parallel
Strand 5	v	477	483	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	423	425	first strand
Strand 2	v	498	502	parallel
Strand 3	v	534	539	parallel
Strand 4	v	522	527	anti-parallel
Strand 5	v	551	555	anti-parallel
Strand 6	v	560	564	anti-parallel
Strand 7	v	587	591	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	638	642	first strand
Strand 2	v	626	631	anti-parallel
Strand 3	v	655	659	anti-parallel
Strand 4	v	664	668	anti-parallel
Strand 5	v	701	705	parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	29	32	first strand
Strand 2	g	16	21	anti-parallel
Strand 3	g	8	11	anti-parallel
Strand 4	g	103	107	parallel
Strand 5	g	131	136	parallel
Strand 6	g	357	358	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	35	36	first strand
Strand 2	g	53	54	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	169	170	first strand
Strand 2	g	160	166	anti-parallel
Strand 3	g	176	178	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	169	170	first strand
Strand 2	g	160	166	anti-parallel
Strand 3	g	150	155	anti-parallel
Strand 4	g	297	300	parallel
Strand 5	g	329	330	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	238	241	first strand
Strand 2	g	247	250	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	412	415	first strand
Strand 2	V	402	409	anti-parallel
Strand 3	V	429	438	anti-parallel
Strand 4	V	441	450	anti-parallel
Strand 5	V	477	483	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	423	425	first strand
Strand 2	V	499	502	parallel
Strand 3	V	535	539	parallel
Strand 4	V	522	526	anti-parallel
Strand 5	V	551	555	anti-parallel
Strand 6	V	561	564	anti-parallel
Strand 7	V	589	591	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	638	639	first strand
Strand 2	V	626	631	anti-parallel
Strand 3	V	655	659	anti-parallel
Strand 4	V	664	668	anti-parallel
Strand 5	V	701	705	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	29	32	first strand
Strand 2	G	16	21	anti-parallel
Strand 3	G	8	11	anti-parallel
Strand 4	G	103	107	parallel
Strand 5	G	131	136	parallel
Strand 6	G	357	358	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	54	first strand
Strand 2	G	35	37	anti-parallel
Strand 3	G	66	68	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	160	166	anti-parallel
Strand 3	G	176	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	170	first strand
Strand 2	G	160	166	anti-parallel
Strand 3	G	150	155	anti-parallel
Strand 4	G	297	300	parallel
Strand 5	G	329	330	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	238	241	first strand
Strand 2	G	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JVT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JVT