Analysis of interatomic Contacts of Structural Units in PDB entry:
9JW0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JW0 entry

There are 2 chains in PDB entry 9JW0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 2	TRP 353
B	THR 5	SER 368

There are 33 helices in PDB entry 9JW0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	34	Right-handed 310
Helix 2	AA2	A	68	86	Right-handed alpha
Helix 3	AA3	A	101	107	Right-handed alpha
Helix 4	AA4	A	153	157	Right-handed 310
Helix 5	AA5	A	180	199	Right-handed alpha
Helix 6	AA6	A	217	228	Right-handed alpha
Helix 7	AA7	A	232	237	Right-handed alpha
Helix 8	AA8	A	245	257	Right-handed alpha
Helix 9	AA9	A	280	284	Right-handed 310
Helix 10	AB1	A	295	297	Right-handed 310
Helix 11	AB2	A	308	326	Right-handed alpha
Helix 12	AB3	A	343	349	Right-handed alpha
Helix 13	AB4	B	55	61	Right-handed alpha
Helix 14	AB5	B	78	92	Right-handed alpha
Helix 15	AB6	B	97	101	Right-handed 310
Helix 16	AB7	B	112	126	Right-handed alpha
Helix 17	AB8	B	137	145	Right-handed alpha
Helix 18	AB9	B	172	175	Right-handed 310
Helix 19	AC1	B	181	197	Right-handed alpha
Helix 20	AC2	B	202	217	Right-handed alpha
Helix 21	AC3	B	222	233	Right-handed alpha
Helix 22	AC4	B	252	257	Right-handed alpha
Helix 23	AC5	B	258	262	Right-handed 310
Helix 24	AC6	B	263	268	Right-handed 310
Helix 25	AC7	B	273	284	Right-handed alpha
Helix 26	AC8	B	285	288	Right-handed 310
Helix 27	AC9	B	289	295	Right-handed alpha
Helix 28	AD1	B	301	305	Right-handed 310
Helix 29	AD2	B	308	321	Right-handed alpha
Helix 30	AD3	B	334	336	Right-handed 310
Helix 31	AD4	B	337	349	Right-handed alpha
Helix 32	AD5	B	351	356	Right-handed alpha
Helix 33	AD6	B	359	365	Right-handed alpha

There are 10 sheets in PDB entry 9JW0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	25	28	first strand
Strand 2	A	15	22	anti-parallel
Strand 3	A	42	51	anti-parallel
Strand 4	A	54	63	anti-parallel
Strand 5	A	91	96	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	38	first strand
Strand 2	A	114	116	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	148	first strand
Strand 2	A	134	139	anti-parallel
Strand 3	A	162	166	anti-parallel
Strand 4	A	170	175	anti-parallel
Strand 5	A	202	207	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	270	276	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	289	293	anti-parallel
Strand 4	A	299	303	anti-parallel
Strand 5	A	334	338	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	12	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	75	76	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	300	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JW0

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JW0