Analysis of interatomic Contacts of Structural Units in PDB entry:
9JW1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JW1 entry

There is 1 chain in PDB entry 9JW1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 523	ARG 5207

There are211 helices in PDB entry 9JW1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	523	541	Right-handed alpha
Helix 2	AA2	A	549	564	Right-handed alpha
Helix 3	AA3	A	583	599	Right-handed alpha
Helix 4	AA4	A	618	633	Right-handed alpha
Helix 5	AA5	A	640	649	Right-handed alpha
Helix 6	AA6	A	654	663	Right-handed alpha
Helix 7	AA7	A	671	686	Right-handed alpha
Helix 8	AA8	A	689	693	Right-handed 310
Helix 9	AA9	A	694	702	Right-handed alpha
Helix 10	AB1	A	715	720	Right-handed alpha
Helix 11	AB2	A	737	746	Right-handed alpha
Helix 12	AB3	A	747	752	Right-handed alpha
Helix 13	AB4	A	754	764	Right-handed alpha
Helix 14	AB5	A	769	777	Right-handed alpha
Helix 15	AB6	A	777	784	Right-handed alpha
Helix 16	AB7	A	786	798	Right-handed alpha
Helix 17	AB8	A	798	807	Right-handed alpha
Helix 18	AB9	A	810	830	Right-handed alpha
Helix 19	AC1	A	843	856	Right-handed alpha
Helix 20	AC2	A	865	887	Right-handed alpha
Helix 21	AC3	A	895	918	Right-handed alpha
Helix 22	AC4	A	934	944	Right-handed alpha
Helix 23	AC5	A	952	966	Right-handed alpha
Helix 24	AC6	A	969	978	Right-handed alpha
Helix 25	AC7	A	989	1008	Right-handed alpha
Helix 26	AC8	A	1021	1037	Right-handed alpha
Helix 27	AC9	A	1043	1054	Right-handed alpha
Helix 28	AD1	A	1054	1067	Right-handed alpha
Helix 29	AD2	A	1068	1074	Right-handed alpha
Helix 30	AD3	A	1075	1099	Right-handed alpha
Helix 31	AD4	A	1102	1112	Right-handed alpha
Helix 32	AD5	A	1112	1127	Right-handed alpha
Helix 33	AD6	A	1135	1166	Right-handed alpha
Helix 34	AD7	A	1176	1184	Right-handed alpha
Helix 35	AD8	A	1190	1195	Right-handed alpha
Helix 36	AD9	A	1214	1226	Right-handed alpha
Helix 37	AE1	A	1230	1245	Right-handed alpha
Helix 38	AE2	A	1270	1277	Right-handed alpha
Helix 39	AE3	A	1280	1296	Right-handed alpha
Helix 40	AE4	A	1301	1307	Right-handed alpha
Helix 41	AE5	A	1313	1326	Right-handed alpha
Helix 42	AE6	A	1335	1367	Right-handed alpha
Helix 43	AE7	A	1374	1384	Right-handed alpha
Helix 44	AE8	A	1409	1411	Right-handed 310
Helix 45	AE9	A	1412	1421	Right-handed alpha
Helix 46	AF1	A	1425	1434	Right-handed alpha
Helix 47	AF2	A	1438	1453	Right-handed alpha
Helix 48	AF3	A	1460	1471	Right-handed alpha
Helix 49	AF4	A	1472	1477	Right-handed alpha
Helix 50	AF5	A	1484	1493	Right-handed alpha
Helix 51	AF6	A	1504	1515	Right-handed alpha
Helix 52	AF7	A	1515	1520	Right-handed alpha
Helix 53	AF8	A	1535	1543	Right-handed alpha
Helix 54	AF9	A	1558	1562	Right-handed alpha
Helix 55	AG1	A	1581	1595	Right-handed alpha
Helix 56	AG2	A	1604	1630	Right-handed alpha
Helix 57	AG3	A	1632	1636	Right-handed 310
Helix 58	AG4	A	1668	1698	Right-handed alpha
Helix 59	AG5	A	1705	1716	Right-handed alpha
Helix 60	AG6	A	1722	1730	Right-handed alpha
Helix 61	AG7	A	1737	1745	Right-handed alpha
Helix 62	AG8	A	1750	1771	Right-handed alpha
Helix 63	AG9	A	1773	1789	Right-handed alpha
Helix 64	AH1	A	1790	1792	Right-handed 310
Helix 65	AH2	A	1798	1812	Right-handed alpha
Helix 66	AH3	A	1836	1840	Right-handed 310
Helix 67	AH4	A	1841	1849	Right-handed alpha
Helix 68	AH5	A	1870	1882	Right-handed alpha
Helix 69	AH6	A	1897	1900	Right-handed 310
Helix 70	AH7	A	1901	1917	Right-handed alpha
Helix 71	AH8	A	1933	1935	Right-handed 310
Helix 72	AH9	A	1937	1944	Right-handed alpha
Helix 73	AI1	A	1945	1947	Right-handed 310
Helix 74	AI2	A	1955	1968	Right-handed alpha
Helix 75	AI3	A	1975	1979	Right-handed 310
Helix 76	AI4	A	1980	1984	Right-handed 310
Helix 77	AI5	A	2003	2014	Right-handed alpha
Helix 78	AI6	A	2031	2040	Right-handed alpha
Helix 79	AI7	A	2041	2043	Right-handed 310
Helix 80	AI8	A	2044	2049	Right-handed 310
Helix 81	AI9	A	2065	2074	Right-handed alpha
Helix 82	AJ1	A	2136	2142	Right-handed alpha
Helix 83	AJ2	A	2165	2173	Right-handed alpha
Helix 84	AJ3	A	2196	2204	Right-handed alpha
Helix 85	AJ4	A	2211	2230	Right-handed alpha
Helix 86	AJ5	A	2246	2264	Right-handed alpha
Helix 87	AJ6	A	2348	2357	Right-handed alpha
Helix 88	AJ7	A	2369	2382	Right-handed alpha
Helix 89	AJ8	A	2396	2413	Right-handed alpha
Helix 90	AJ9	A	2425	2439	Right-handed alpha
Helix 91	AK1	A	2456	2477	Right-handed alpha
Helix 92	AK2	A	2495	2503	Right-handed alpha
Helix 93	AK3	A	2531	2540	Right-handed alpha
Helix 94	AK4	A	2562	2564	Right-handed 310
Helix 95	AK5	A	2586	2600	Right-handed alpha
Helix 96	AK6	A	2601	2606	Right-handed alpha
Helix 97	AK7	A	2608	2629	Right-handed alpha
Helix 98	AK8	A	2637	2639	Right-handed 310
Helix 99	AK9	A	2640	2669	Right-handed alpha
Helix 100	AL1	A	2679	2693	Right-handed alpha
Helix 101	AL2	A	2699	2708	Right-handed alpha
Helix 102	AL3	A	2709	2711	Right-handed 310
Helix 103	AL4	A	2712	2716	Right-handed 310
Helix 104	AL5	A	2717	2734	Right-handed alpha
Helix 105	AL6	A	2745	2761	Right-handed alpha
Helix 106	AL7	A	2774	2787	Right-handed alpha
Helix 107	AL8	A	2793	2798	Right-handed alpha
Helix 108	AL9	A	2814	2830	Right-handed alpha
Helix 109	AM1	A	2846	2850	Right-handed 310
Helix 110	AM2	A	2859	2867	Right-handed alpha
Helix 111	AM3	A	2907	2918	Right-handed alpha
Helix 112	AM4	A	2923	2928	Right-handed alpha
Helix 113	AM5	A	2934	2947	Right-handed alpha
Helix 114	AM6	A	2953	2968	Right-handed alpha
Helix 115	AM7	A	2978	2985	Right-handed alpha
Helix 116	AM8	A	2994	3003	Right-handed alpha
Helix 117	AM9	A	3015	3023	Right-handed alpha
Helix 118	AN1	A	3050	3058	Right-handed alpha
Helix 119	AN2	A	3078	3097	Right-handed alpha
Helix 120	AN3	A	3154	3161	Right-handed alpha
Helix 121	AN4	A	3162	3169	Right-handed alpha
Helix 122	AN5	A	3181	3200	Right-handed alpha
Helix 123	AN6	A	3213	3218	Right-handed alpha
Helix 124	AN7	A	3224	3238	Right-handed alpha
Helix 125	AN8	A	3243	3259	Right-handed alpha
Helix 126	AN9	A	3260	3262	Right-handed 310
Helix 127	AO1	A	3263	3274	Right-handed alpha
Helix 128	AO2	A	3277	3290	Right-handed alpha
Helix 129	AO3	A	3295	3305	Right-handed alpha
Helix 130	AO4	A	3326	3338	Right-handed alpha
Helix 131	AO5	A	3354	3367	Right-handed alpha
Helix 132	AO6	A	3386	3405	Right-handed alpha
Helix 133	AO7	A	3454	3460	Right-handed 310
Helix 134	AO8	A	3463	3468	Right-handed alpha
Helix 135	AO9	A	3531	3538	Right-handed alpha
Helix 136	AP1	A	3539	3544	Right-handed alpha
Helix 137	AP2	A	3555	3568	Right-handed alpha
Helix 138	AP3	A	3572	3595	Right-handed alpha
Helix 139	AP4	A	3602	3610	Right-handed alpha
Helix 140	AP5	A	3610	3616	Right-handed alpha
Helix 141	AP6	A	3619	3629	Right-handed alpha
Helix 142	AP7	A	3632	3641	Right-handed alpha
Helix 143	AP8	A	3648	3652	Right-handed 310
Helix 144	AP9	A	3658	3671	Right-handed alpha
Helix 145	AQ1	A	3711	3730	Right-handed alpha
Helix 146	AQ2	A	3734	3746	Right-handed alpha
Helix 147	AQ3	A	3746	3755	Right-handed alpha
Helix 148	AQ4	A	3757	3776	Right-handed alpha
Helix 149	AQ5	A	3780	3801	Right-handed alpha
Helix 150	AQ6	A	3810	3821	Right-handed alpha
Helix 151	AQ7	A	3821	3835	Right-handed alpha
Helix 152	AQ8	A	3837	3849	Right-handed alpha
Helix 153	AQ9	A	3857	3873	Right-handed alpha
Helix 154	AR1	A	3878	3898	Right-handed alpha
Helix 155	AR2	A	3899	3902	Right-handed 310
Helix 156	AR3	A	3906	3933	Right-handed alpha
Helix 157	AR4	A	3934	3939	Right-handed alpha
Helix 158	AR5	A	3944	3959	Right-handed alpha
Helix 159	AR6	A	3967	3986	Right-handed alpha
Helix 160	AR7	A	4018	4026	Right-handed alpha
Helix 161	AR8	A	4048	4078	Right-handed alpha
Helix 162	AR9	A	4085	4097	Right-handed alpha
Helix 163	AS1	A	4146	4159	Right-handed alpha
Helix 164	AS2	A	4167	4187	Right-handed alpha
Helix 165	AS3	A	4190	4207	Right-handed alpha
Helix 166	AS4	A	4222	4244	Right-handed alpha
Helix 167	AS5	A	4252	4271	Right-handed alpha
Helix 168	AS6	A	4273	4288	Right-handed alpha
Helix 169	AS7	A	4288	4296	Right-handed alpha
Helix 170	AS8	A	4308	4316	Right-handed alpha
Helix 171	AS9	A	4331	4347	Right-handed alpha
Helix 172	AT1	A	4350	4359	Right-handed alpha
Helix 173	AT2	A	4363	4385	Right-handed alpha
Helix 174	AT3	A	4393	4407	Right-handed alpha
Helix 175	AT4	A	4412	4424	Right-handed alpha
Helix 176	AT5	A	4439	4457	Right-handed alpha
Helix 177	AT6	A	4462	4471	Right-handed alpha
Helix 178	AT7	A	4575	4597	Right-handed alpha
Helix 179	AT8	A	4597	4605	Right-handed alpha
Helix 180	AT9	A	4615	4632	Right-handed alpha
Helix 181	AU1	A	4634	4651	Right-handed alpha
Helix 182	AU2	A	4670	4691	Right-handed alpha
Helix 183	AU3	A	4691	4706	Right-handed alpha
Helix 184	AU4	A	4707	4711	Right-handed 310
Helix 185	AU5	A	4712	4719	Right-handed alpha
Helix 186	AU6	A	4721	4725	Right-handed 310
Helix 187	AU7	A	4748	4760	Right-handed alpha
Helix 188	AU8	A	4765	4774	Right-handed alpha
Helix 189	AU9	A	4774	4779	Right-handed alpha
Helix 190	AV1	A	4780	4782	Right-handed 310
Helix 191	AV2	A	4783	4796	Right-handed alpha
Helix 192	AV3	A	4808	4816	Right-handed alpha
Helix 193	AV4	A	4818	4847	Right-handed alpha
Helix 194	AV5	A	4854	4858	Right-handed 310
Helix 195	AV6	A	4865	4869	Right-handed 310
Helix 196	AV7	A	4876	4900	Right-handed alpha
Helix 197	AV8	A	4929	4934	Right-handed alpha
Helix 198	AV9	A	4952	4964	Right-handed alpha
Helix 199	AW1	A	4986	4998	Right-handed alpha
Helix 200	AW2	A	5004	5015	Right-handed alpha
Helix 201	AW3	A	5017	5038	Right-handed alpha
Helix 202	AW4	A	5045	5053	Right-handed alpha
Helix 203	AW5	A	5060	5068	Right-handed alpha
Helix 204	AW6	A	5074	5093	Right-handed alpha
Helix 205	AW7	A	5102	5106	Right-handed 310
Helix 206	AW8	A	5110	5124	Right-handed alpha
Helix 207	AW9	A	5127	5140	Right-handed alpha
Helix 208	AX1	A	5148	5153	Right-handed alpha
Helix 209	AX2	A	5158	5170	Right-handed alpha
Helix 210	AX3	A	5174	5181	Right-handed alpha
Helix 211	AX4	A	5190	5203	Right-handed alpha

There are 18 sheets in PDB entry 9JW1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1579	1580	first strand
Strand 2	A	1563	1566	anti-parallel
Strand 3	A	1545	1549	anti-parallel
Strand 4	A	1638	1642	anti-parallel
Strand 5	A	1651	1654	anti-parallel
Strand 6	A	1663	1665	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1830	1835	first strand
Strand 2	A	1926	1931	parallel
Strand 3	A	1892	1895	parallel
Strand 4	A	1862	1864	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2020	2025	first strand
Strand 2	A	2053	2058	parallel
Strand 3	A	2095	2100	parallel
Strand 4	A	1987	1991	parallel
Strand 5	A	2129	2131	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2078	2079	first strand
Strand 2	A	2087	2088	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2306	2307	first strand
Strand 2	A	2316	2317	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2323	2324	first strand
Strand 2	A	2329	2332	anti-parallel
Strand 3	A	2342	2347	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2446	2450	first strand
Strand 2	A	2483	2487	parallel
Strand 3	A	2519	2524	parallel
Strand 4	A	2416	2419	parallel
Strand 5	A	2580	2581	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2506	2507	first strand
Strand 2	A	2510	2511	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2555	2556	first strand
Strand 2	A	2559	2560	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2801	2808	first strand
Strand 2	A	2837	2844	parallel
Strand 3	A	2880	2885	parallel
Strand 4	A	2765	2768	parallel
Strand 5	A	2898	2901	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3067	3069	first strand
Strand 2	A	3100	3102	parallel
Strand 3	A	3148	3153	parallel
Strand 4	A	3042	3046	parallel
Strand 5	A	3170	3173	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3121	3123	first strand
Strand 2	A	3126	3133	anti-parallel
Strand 3	A	3136	3142	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3345	3348	first strand
Strand 2	A	3373	3380	parallel
Strand 3	A	3412	3419	parallel
Strand 4	A	3313	3320	parallel
Strand 5	A	3439	3441	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3547	3549	first strand
Strand 2	A	3693	3695	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4007	4009	first strand
Strand 2	A	4015	4017	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4503	4504	first strand
Strand 2	A	4510	4511	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4910	4911	first strand
Strand 2	A	4970	4971	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4940	4941	first strand
Strand 2	A	4947	4948	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JW1

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JW1