Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWA entry

There are 4 chains in PDB entry 9JWA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 8HIS 89
B
 GLU 3VAL 205
C
 HIS 7HIS 89
D
 GLU 3SER 201
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9JWA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 19Right-handed alpha
Helix 2
AA2
A
31 39Right-handed alpha
Helix 3
AA3
A
44 49Right-handed 310
Helix 4
AA4
A
70 81Right-handed alpha
Helix 5
AA5
B
29 41Right-handed alpha
Helix 6
AA6
B
60 64Right-handed 310
Helix 7
AA7
B
120 141Right-handed alpha
Helix 8
AA8
B
145 152Right-handed alpha
Helix 9
AA9
B
153 155Right-handed 310
Helix 10
AB1
B
157 167Right-handed alpha
Helix 11
AB2
B
172 182Right-handed alpha
Helix 12
AB3
B
184 197Right-handed alpha
Helix 13
AB4
C
12 19Right-handed alpha
Helix 14
AB5
C
31 39Right-handed alpha
Helix 15
AB6
C
44 49Right-handed 310
Helix 16
AB7
C
70 81Right-handed alpha
Helix 17
AB8
D
29 42Right-handed alpha
Helix 18
AB9
D
60 64Right-handed 310
Helix 19
AC1
D
120 141Right-handed alpha
Helix 20
AC2
D
145 152Right-handed alpha
Helix 21
AC3
D
153 155Right-handed 310
Helix 22
AC4
D
157 167Right-handed alpha
Helix 23
AC5
D
172 182Right-handed alpha
Helix 24
AC6
D
184 201Right-handed alpha
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There are 2 sheets in PDB entry 9JWA. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 68first strand
Strand 2
A
55 59anti-parallel
Strand 3
A
24 29anti-parallel
Strand 4
A
84 89parallel
Strand 5
B
22 27parallel
Strand 6
B
84 99anti-parallel
Strand 7
B
107 112anti-parallel
Strand 8
B
5 12anti-parallel
Strand 9
B
45 50parallel
Strand 10
B
67 78anti-parallel
Strand 11
B
84 99anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
64 68first strand
Strand 2
C
55 59anti-parallel
Strand 3
C
24 29anti-parallel
Strand 4
C
84 89parallel
Strand 5
D
22 27parallel
Strand 6
D
84 99anti-parallel
Strand 7
D
107 112anti-parallel
Strand 8
D
5 12anti-parallel
Strand 9
D
45 50parallel
Strand 10
D
67 78anti-parallel
Strand 11
D
84 99anti-parallel
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