Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JWB entry

There are 15 chains in PDB entry 9JWB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 353
B	ALA 2	VAL 354
C	ALA 2	VAL 353
D	ALA 2	VAL 353
E	ALA 2	VAL 353
F	ALA 2	VAL 353
G	ALA 2	VAL 353
Z	SER 2	ALA 202
a	ALA 2	ALA 89
b	ALA 2	ALA 89
c	ALA 2	ALA 89
d	ALA 2	ALA 89
e	ALA 2	ALA 89
f	ALA 2	ALA 89
g	ALA 2	ALA 89

There are 75 helices in PDB entry 9JWB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	106	112	Right-handed alpha
Helix 3	AA3	A	115	139	Right-handed alpha
Helix 4	AA4	A	139	147	Right-handed alpha
Helix 5	AA5	A	168	181	Right-handed alpha
Helix 6	AA6	A	194	204	Right-handed alpha
Helix 7	AA7	A	285	290	Right-handed alpha
Helix 8	AA8	B	106	112	Right-handed alpha
Helix 9	AA9	B	115	138	Right-handed alpha
Helix 10	AB1	B	138	145	Right-handed alpha
Helix 11	AB2	B	168	182	Right-handed alpha
Helix 12	AB3	B	194	202	Right-handed alpha
Helix 13	AB4	B	204	209	Right-handed alpha
Helix 14	AB5	B	216	221	Right-handed alpha
Helix 15	AB6	B	285	290	Right-handed 310
Helix 16	AB7	C	22	26	Right-handed 310
Helix 17	AB8	C	43	48	Right-handed 310
Helix 18	AB9	C	106	112	Right-handed alpha
Helix 19	AC1	C	115	138	Right-handed alpha
Helix 20	AC2	C	139	147	Right-handed alpha
Helix 21	AC3	C	168	182	Right-handed alpha
Helix 22	AC4	C	194	202	Right-handed alpha
Helix 23	AC5	C	204	209	Right-handed alpha
Helix 24	AC6	C	216	221	Right-handed alpha
Helix 25	AC7	C	285	290	Right-handed 310
Helix 26	AC8	D	106	112	Right-handed alpha
Helix 27	AC9	D	115	138	Right-handed alpha
Helix 28	AD1	D	139	147	Right-handed alpha
Helix 29	AD2	D	168	182	Right-handed alpha
Helix 30	AD3	D	194	201	Right-handed alpha
Helix 31	AD4	D	204	209	Right-handed alpha
Helix 32	AD5	D	216	221	Right-handed alpha
Helix 33	AD6	D	285	290	Right-handed 310
Helix 34	AD7	E	22	26	Right-handed 310
Helix 35	AD8	E	43	48	Right-handed 310
Helix 36	AD9	E	106	112	Right-handed alpha
Helix 37	AE1	E	115	139	Right-handed alpha
Helix 38	AE2	E	139	147	Right-handed alpha
Helix 39	AE3	E	168	182	Right-handed alpha
Helix 40	AE4	E	194	201	Right-handed alpha
Helix 41	AE5	E	204	209	Right-handed alpha
Helix 42	AE6	E	216	221	Right-handed alpha
Helix 43	AE7	E	285	290	Right-handed 310
Helix 44	AE8	F	106	112	Right-handed alpha
Helix 45	AE9	F	115	138	Right-handed alpha
Helix 46	AF1	F	139	147	Right-handed alpha
Helix 47	AF2	F	168	182	Right-handed alpha
Helix 48	AF3	F	194	202	Right-handed alpha
Helix 49	AF4	F	204	209	Right-handed alpha
Helix 50	AF5	F	216	221	Right-handed alpha
Helix 51	AF6	F	285	290	Right-handed 310
Helix 52	AF7	G	106	112	Right-handed alpha
Helix 53	AF8	G	115	138	Right-handed alpha
Helix 54	AF9	G	139	146	Right-handed alpha
Helix 55	AG1	G	168	182	Right-handed alpha
Helix 56	AG2	G	194	201	Right-handed alpha
Helix 57	AG3	G	204	209	Right-handed alpha
Helix 58	AG4	G	216	221	Right-handed alpha
Helix 59	AG5	G	285	290	Right-handed 310
Helix 60	AG6	Z	3	11	Right-handed alpha
Helix 61	AG7	Z	153	157	Right-handed 310
Helix 62	AG8	a	14	21	Right-handed alpha
Helix 63	AG9	a	65	83	Right-handed alpha
Helix 64	AH1	b	14	21	Right-handed alpha
Helix 65	AH2	b	65	83	Right-handed alpha
Helix 66	AH3	c	14	21	Right-handed alpha
Helix 67	AH4	c	65	83	Right-handed alpha
Helix 68	AH5	d	14	21	Right-handed alpha
Helix 69	AH6	d	65	84	Right-handed alpha
Helix 70	AH7	e	14	21	Right-handed alpha
Helix 71	AH8	e	65	83	Right-handed alpha
Helix 72	AH9	f	14	21	Right-handed alpha
Helix 73	AI1	f	65	83	Right-handed alpha
Helix 74	AI2	g	14	21	Right-handed alpha
Helix 75	AI3	g	65	84	Right-handed alpha

There are 38 sheets in PDB entry 9JWB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	52	first strand
Strand 2	A	302	317	parallel
Strand 3	A	322	335	anti-parallel
Strand 4	A	96	105	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	60	64	first strand
Strand 2	A	89	93	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	341	346	parallel
Strand 3	A	292	298	anti-parallel
Strand 4	A	189	193	anti-parallel
Strand 5	A	229	233	parallel
Strand 6	A	224	226	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	252	254	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	C	60	66	parallel
Strand 3	B	35	36	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	C	60	66	parallel
Strand 3	C	89	93	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	52	first strand
Strand 2	B	303	317	parallel
Strand 3	B	322	334	anti-parallel
Strand 4	B	96	105	anti-parallel
Strand 5	C	72	73	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	93	first strand
Strand 2	B	60	64	anti-parallel
Strand 3	G	28	30	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	73	first strand
Strand 2	G	96	105	anti-parallel
Strand 3	G	322	335	anti-parallel
Strand 4	G	302	317	anti-parallel
Strand 5	G	49	52	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	341	346	parallel
Strand 3	B	292	298	anti-parallel
Strand 4	B	189	193	anti-parallel
Strand 5	B	231	233	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	246	first strand
Strand 2	B	252	254	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	D	60	64	parallel
Strand 3	D	89	93	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	49	52	first strand
Strand 2	C	303	317	parallel
Strand 3	C	322	334	anti-parallel
Strand 4	C	96	105	anti-parallel
Strand 5	D	72	73	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	341	346	parallel
Strand 3	C	292	298	anti-parallel
Strand 4	C	189	193	anti-parallel
Strand 5	C	231	233	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	246	first strand
Strand 2	C	252	254	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	E	60	66	parallel
Strand 3	D	35	36	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	28	30	first strand
Strand 2	E	60	66	parallel
Strand 3	E	89	93	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	49	52	first strand
Strand 2	D	302	317	parallel
Strand 3	D	322	335	anti-parallel
Strand 4	D	96	105	anti-parallel
Strand 5	E	72	73	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	341	346	parallel
Strand 3	D	292	298	anti-parallel
Strand 4	D	189	193	anti-parallel
Strand 5	D	231	233	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	246	first strand
Strand 2	D	252	254	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	28	30	first strand
Strand 2	F	60	64	parallel
Strand 3	F	89	93	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	49	51	first strand
Strand 2	E	303	317	parallel
Strand 3	E	322	334	anti-parallel
Strand 4	E	96	105	anti-parallel
Strand 5	F	72	73	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	153	first strand
Strand 2	E	341	346	parallel
Strand 3	E	292	298	anti-parallel
Strand 4	E	189	193	anti-parallel
Strand 5	E	231	233	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	245	246	first strand
Strand 2	E	252	254	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	28	30	first strand
Strand 2	G	60	64	parallel
Strand 3	G	89	93	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	49	52	first strand
Strand 2	F	302	317	parallel
Strand 3	F	322	335	anti-parallel
Strand 4	F	96	105	anti-parallel
Strand 5	G	72	73	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	153	first strand
Strand 2	F	341	346	parallel
Strand 3	F	292	298	anti-parallel
Strand 4	F	189	193	anti-parallel
Strand 5	F	231	233	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	245	247	first strand
Strand 2	F	251	254	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	153	first strand
Strand 2	G	341	346	parallel
Strand 3	G	292	298	anti-parallel
Strand 4	G	189	193	anti-parallel
Strand 5	G	229	233	parallel
Strand 6	G	225	226	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	245	247	first strand
Strand 2	G	251	254	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	37	38	first strand
Strand 2	Z	197	201	anti-parallel
Strand 3	Z	66	77	anti-parallel
Strand 4	Z	115	120	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	44	49	first strand
Strand 2	Z	144	148	anti-parallel
Strand 3	Z	66	77	anti-parallel
Strand 4	Z	126	128	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	97	103	first strand
Strand 2	Z	82	90	anti-parallel
Strand 3	Z	108	109	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	97	103	first strand
Strand 2	Z	82	90	anti-parallel
Strand 3	Z	131	139	anti-parallel
Strand 4	Z	54	62	anti-parallel
Strand 5	Z	170	173	anti-parallel
Strand 6	Z	188	189	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	46	51	first strand
Strand 2	a	54	59	anti-parallel
Strand 3	a	4	13	anti-parallel
Strand 4	b	4	13	anti-parallel
Strand 5	b	54	59	anti-parallel
Strand 6	b	46	51	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	46	50	first strand
Strand 2	c	54	59	anti-parallel
Strand 3	c	4	13	anti-parallel
Strand 4	d	4	13	anti-parallel
Strand 5	d	54	59	anti-parallel
Strand 6	d	46	51	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	9	13	first strand
Strand 2	e	54	59	anti-parallel
Strand 3	e	46	51	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	46	50	first strand
Strand 2	f	54	59	anti-parallel
Strand 3	f	4	13	anti-parallel
Strand 4	g	4	13	anti-parallel
Strand 5	g	54	59	anti-parallel
Strand 6	g	46	51	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JWB

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWB