Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWK entry

There are 2 chains in PDB entry 9JWK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 12ILE 1372
B
 U 1 U 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 9JWK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
57 92Right-handed alpha
Helix 2
AA2
A
94 101Right-handed alpha
Helix 3
AA3
A
124 132Right-handed alpha
Helix 4
AA4
A
134 144Right-handed alpha
Helix 5
AA5
A
150 164Right-handed alpha
Helix 6
AA6
A
173 178Right-handed 310
Helix 7
AA7
A
180 188Right-handed alpha
Helix 8
AA8
A
206 214Right-handed alpha
Helix 9
AA9
A
218 231Right-handed alpha
Helix 10
AB1
A
236 249Right-handed alpha
Helix 11
AB2
A
278 287Right-handed alpha
Helix 12
AB3
A
304 312Right-handed alpha
Helix 13
AB4
A
331 350Right-handed alpha
Helix 14
AB5
A
356 361Right-handed alpha
Helix 15
AB6
A
367 373Right-handed alpha
Helix 16
AB7
A
389 402Right-handed alpha
Helix 17
AB8
A
407 420Right-handed alpha
Helix 18
AB9
A
430 434Right-handed 310
Helix 19
AC1
A
435 452Right-handed alpha
Helix 20
AC2
A
454 458Right-handed 310
Helix 21
AC3
A
468 477Right-handed alpha
Helix 22
AC4
A
512 517Right-handed alpha
Helix 23
AC5
A
518 531Right-handed alpha
Helix 24
AC6
A
547 562Right-handed alpha
Helix 25
AC7
A
575 584Right-handed alpha
Helix 26
AC8
A
592 604Right-handed alpha
Helix 27
AC9
A
625 636Right-handed alpha
Helix 28
AD1
A
641 659Right-handed alpha
Helix 29
AD2
A
661 673Right-handed alpha
Helix 30
AD3
A
677 686Right-handed alpha
Helix 31
AD4
A
697 701Right-handed alpha
Helix 32
AD5
A
714 722Right-handed alpha
Helix 33
AD6
A
725 730Right-handed alpha
Helix 34
AD7
A
734 744Right-handed alpha
Helix 35
AD8
A
750 754Right-handed 310
Helix 36
AD9
A
757 761Right-handed 310
Helix 37
AE1
A
765 787Right-handed alpha
Helix 38
AE2
A
965 977Right-handed alpha
Helix 39
AE3
A
986 997Right-handed alpha
Helix 40
AE4
A
1007 1027Right-handed alpha
Helix 41
AE5
A
1051 1055Right-handed 310
Helix 42
AE6
A
1068 1070Right-handed 310
Helix 43
AE7
A
1071 1082Right-handed alpha
Helix 44
AE8
A
1128 1133Right-handed alpha
Helix 45
AE9
A
1164 1166Right-handed 310
Helix 46
AF1
A
1171 1182Right-handed alpha
Helix 47
AF2
A
1229 1244Right-handed alpha
Helix 48
AF3
A
1252 1274Right-handed alpha
Helix 49
AF4
A
1277 1282Right-handed 310
Helix 50
AF5
A
1286 1293Right-handed alpha
Helix 51
AF6
A
1294 1299Right-handed alpha
Helix 52
AF7
A
1301 1314Right-handed alpha
Helix 53
AF8
A
1315 1317Right-handed 310
Helix 54
AF9
A
1325 1329Right-handed 310
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There are 8 sheets in PDB entry 9JWK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
981 985first strand
Strand 2
A
792 796parallel
Strand 3
A
15 21parallel
Strand 4
A
25 32anti-parallel
Strand 5
A
46 50anti-parallel
Strand 6
A
1087 1090parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 253first strand
Strand 2
A
271 272anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
542 544first strand
Strand 2
A
692 696anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
563 564first strand
Strand 2
A
614 615anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1060first strand
Strand 2
A
1063 1066anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1189 1195first strand
Strand 2
A
1140 1150anti-parallel
Strand 3
A
1153 1162anti-parallel
Strand 4
A
1343 1344anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1339 1341first strand
Strand 2
A
1217 1222anti-parallel
Strand 3
A
1206 1214anti-parallel
Strand 4
A
1200 1203anti-parallel
Strand 5
A
1352 1357anti-parallel
Strand 6
A
1364 1368anti-parallel
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