Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWN entry

There are 4 chains in PDB entry 9JWN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 T -3 A 9
B
 C 3 U 119
C
 T -10 T 16
A
 ASN 12ILE 1372
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 9JWN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 84Right-handed alpha
Helix 2
AA2
A
84 90Right-handed alpha
Helix 3
AA3
A
91 93Right-handed 310
Helix 4
AA4
A
94 101Right-handed alpha
Helix 5
AA5
A
124 132Right-handed alpha
Helix 6
AA6
A
134 145Right-handed alpha
Helix 7
AA7
A
150 164Right-handed alpha
Helix 8
AA8
A
180 190Right-handed alpha
Helix 9
AA9
A
199 204Right-handed alpha
Helix 10
AB1
A
204 214Right-handed alpha
Helix 11
AB2
A
218 231Right-handed alpha
Helix 12
AB3
A
278 287Right-handed alpha
Helix 13
AB4
A
300 312Right-handed alpha
Helix 14
AB5
A
325 352Right-handed alpha
Helix 15
AB6
A
355 360Right-handed alpha
Helix 16
AB7
A
367 373Right-handed alpha
Helix 17
AB8
A
389 402Right-handed alpha
Helix 18
AB9
A
407 420Right-handed alpha
Helix 19
AC1
A
435 452Right-handed alpha
Helix 20
AC2
A
454 459Right-handed 310
Helix 21
AC3
A
466 477Right-handed alpha
Helix 22
AC4
A
512 517Right-handed alpha
Helix 23
AC5
A
518 531Right-handed alpha
Helix 24
AC6
A
547 562Right-handed alpha
Helix 25
AC7
A
626 636Right-handed alpha
Helix 26
AC8
A
644 658Right-handed alpha
Helix 27
AC9
A
661 673Right-handed alpha
Helix 28
AD1
A
677 687Right-handed alpha
Helix 29
AD2
A
696 701Right-handed alpha
Helix 30
AD3
A
715 722Right-handed alpha
Helix 31
AD4
A
734 744Right-handed alpha
Helix 32
AD5
A
765 784Right-handed alpha
Helix 33
AD6
A
966 976Right-handed alpha
Helix 34
AD7
A
988 997Right-handed alpha
Helix 35
AD8
A
1007 1021Right-handed alpha
Helix 36
AD9
A
1072 1082Right-handed alpha
Helix 37
AE1
A
1122 1127Right-handed alpha
Helix 38
AE2
A
1128 1133Right-handed alpha
Helix 39
AE3
A
1164 1166Right-handed 310
Helix 40
AE4
A
1171 1182Right-handed alpha
Helix 41
AE5
A
1229 1244Right-handed alpha
Helix 42
AE6
A
1256 1274Right-handed alpha
Helix 43
AE7
A
1277 1281Right-handed 310
Helix 44
AE8
A
1286 1293Right-handed alpha
Helix 45
AE9
A
1293 1299Right-handed alpha
Helix 46
AF1
A
1301 1307Right-handed alpha
Helix 47
AF2
A
1308 1314Right-handed alpha
Helix 48
AF3
A
1315 1317Right-handed 310
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There are 6 sheets in PDB entry 9JWN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
981 984first strand
Strand 2
A
792 795parallel
Strand 3
A
16 21parallel
Strand 4
A
25 31anti-parallel
Strand 5
A
46 50anti-parallel
Strand 6
A
1087 1090parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 40first strand
Strand 2
A
43 44anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1116 1117first strand
Strand 2
A
1134 1135anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1189 1195first strand
Strand 2
A
1140 1150anti-parallel
Strand 3
A
1153 1162anti-parallel
Strand 4
A
1343 1344anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1199 1203first strand
Strand 2
A
1206 1210anti-parallel
Strand 3
A
1217 1222anti-parallel
Strand 4
A
1338 1341anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1355 1357first strand
Strand 2
A
1364 1366anti-parallel
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