Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWR entry

There are 3 chains in PDB entry 9JWR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 82VAL 278
B
 LEU 85VAL 278
C
 ALA 84VAL 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9JWR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 97Right-handed alpha
Helix 2
AA2
A
99 103Right-handed 310
Helix 3
AA3
A
107 124Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
133 138Right-handed alpha
Helix 6
AA6
A
152 159Right-handed alpha
Helix 7
AA7
A
224 232Right-handed alpha
Helix 8
AA8
A
234 243Right-handed alpha
Helix 9
AA9
A
274 278Right-handed 310
Helix 10
AB1
B
86 97Right-handed alpha
Helix 11
AB2
B
99 103Right-handed 310
Helix 12
AB3
B
107 124Right-handed alpha
Helix 13
AB4
B
129 132Right-handed 310
Helix 14
AB5
B
133 138Right-handed alpha
Helix 15
AB6
B
152 159Right-handed alpha
Helix 16
AB7
B
190 193Right-handed 310
Helix 17
AB8
B
224 232Right-handed alpha
Helix 18
AB9
B
234 243Right-handed alpha
Helix 19
AC1
B
274 278Right-handed 310
Helix 20
AC2
C
85 97Right-handed alpha
Helix 21
AC3
C
99 103Right-handed 310
Helix 22
AC4
C
107 124Right-handed alpha
Helix 23
AC5
C
129 132Right-handed 310
Helix 24
AC6
C
133 138Right-handed alpha
Helix 25
AC7
C
152 159Right-handed alpha
Helix 26
AC8
C
224 232Right-handed alpha
Helix 27
AC9
C
234 243Right-handed alpha
Helix 28
AD1
C
274 278Right-handed 310
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There are 3 sheets in PDB entry 9JWR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 147first strand
Strand 2
A
166 175anti-parallel
Strand 3
A
180 189anti-parallel
Strand 4
A
194 207anti-parallel
Strand 5
A
212 223anti-parallel
Strand 6
A
246 253anti-parallel
Strand 7
A
257 262anti-parallel
Strand 8
A
267 273anti-parallel
Strand 9
A
140 147anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
140 147first strand
Strand 2
B
166 175anti-parallel
Strand 3
B
180 189anti-parallel
Strand 4
B
194 207anti-parallel
Strand 5
B
212 223anti-parallel
Strand 6
B
246 253anti-parallel
Strand 7
B
257 262anti-parallel
Strand 8
B
267 272anti-parallel
Strand 9
B
140 147anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
140 147first strand
Strand 2
C
165 175anti-parallel
Strand 3
C
180 189anti-parallel
Strand 4
C
197 207anti-parallel
Strand 5
C
212 223anti-parallel
Strand 6
C
246 253anti-parallel
Strand 7
C
257 262anti-parallel
Strand 8
C
267 272anti-parallel
Strand 9
C
140 147anti-parallel
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