Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWS entry

There are 2 chains in PDB entry 9JWS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 6ALA 234
B
 SER 6PRO 237
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 9JWS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 30Right-handed alpha
Helix 2
AA2
A
34 60Right-handed alpha
Helix 3
AA3
A
79 101Right-handed alpha
Helix 4
AA4
A
103 127Right-handed alpha
Helix 5
AA5
A
131 154Right-handed alpha
Helix 6
AA6
A
154 164Right-handed alpha
Helix 7
AA7
A
164 183Right-handed alpha
Helix 8
AA8
A
184 192Right-handed alpha
Helix 9
AA9
A
201 227Right-handed alpha
Helix 10
AB1
A
227 233Right-handed alpha
Helix 11
AB2
B
7 30Right-handed alpha
Helix 12
AB3
B
34 60Right-handed alpha
Helix 13
AB4
B
79 101Right-handed alpha
Helix 14
AB5
B
103 127Right-handed alpha
Helix 15
AB6
B
131 154Right-handed alpha
Helix 16
AB7
B
154 164Right-handed alpha
Helix 17
AB8
B
164 183Right-handed alpha
Helix 18
AB9
B
184 192Right-handed alpha
Helix 19
AC1
B
201 227Right-handed alpha
Helix 20
AC2
B
227 234Right-handed alpha
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There are 2 sheets in PDB entry 9JWS. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
77 78anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
64 65first strand
Strand 2
B
77 78anti-parallel
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