Analysis of interatomic Contacts of Structural Units in PDB entry:
9JWY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JWY entry

There is 1 chain in PDB entry 9JWY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 24ALA 327
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9JWY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 47Right-handed alpha
Helix 2
AA2
A
60 69Right-handed alpha
Helix 3
AA3
A
87 97Right-handed alpha
Helix 4
AA4
A
126 135Right-handed alpha
Helix 5
AA5
A
151 156Right-handed alpha
Helix 6
AA6
A
173 183Right-handed alpha
Helix 7
AA7
A
183 188Right-handed alpha
Helix 8
AA8
A
189 202Right-handed alpha
Helix 9
AA9
A
204 208Right-handed 310
Helix 10
AB1
A
209 213Right-handed 310
Helix 11
AB2
A
229 237Right-handed alpha
Helix 12
AB3
A
245 252Right-handed alpha
Helix 13
AB4
A
267 273Right-handed alpha
Helix 14
AB5
A
289 291Right-handed 310
Helix 15
AB6
A
296 305Right-handed alpha
Helix 16
AB7
A
306 311Right-handed alpha
Helix 17
AB8
A
316 320Right-handed 310
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There are 4 sheets in PDB entry 9JWY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
28 31parallel
Strand 3
A
79 82parallel
Strand 4
A
279 287anti-parallel
Strand 5
A
102 111anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 222first strand
Strand 2
A
166 168parallel
Strand 3
A
241 244parallel
Strand 4
A
113 117anti-parallel
Strand 5
A
256 258anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
124 125first strand
Strand 2
A
260 261parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 140first strand
Strand 2
A
143 146anti-parallel
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