Analysis of interatomic Contacts of Structural Units in PDB entry:
9JX4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9JX4 entry

There is 1 chain in PDB entry 9JX4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9JX4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
19 25Right-handed alpha
Helix 3
AA3
A
37 42Right-handed alpha
Helix 4
AA4
A
43 55Right-handed alpha
Helix 5
AA5
A
70 85Right-handed alpha
Helix 6
AA6
A
94 110Right-handed alpha
Helix 7
AA7
A
114 118Right-handed 310
Helix 8
AA8
A
139 143Right-handed 310
Helix 9
AA9
A
171 176Right-handed 310
Helix 10
AB1
A
179 200Right-handed alpha
Helix 11
AB2
A
207 227Right-handed alpha
Helix 12
AB3
A
232 254Right-handed alpha
Helix 13
AB4
A
256 270Right-handed alpha
Helix 14
AB5
A
272 292Right-handed alpha
Helix 15
AB6
A
292 304Right-handed alpha
Helix 16
AB7
A
307 320Right-handed alpha
Helix 17
AB8
A
325 339Right-handed alpha
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
351 363Right-handed alpha
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There are 3 sheets in PDB entry 9JX4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 11first strand
Strand 2
A
167 170parallel
Strand 3
A
129 133parallel
Strand 4
A
88 93parallel
Strand 5
A
30 34parallel
Strand 6
A
59 62parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
147 150first strand
Strand 2
A
155 158anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
323 324first strand
Strand 2
A
364 365parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il