Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9JXS entry

There are 12 chains in PDB entry 9JXS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	VAL 80	PRO 522
E	ASN 2	ILE 166
F	MET 1	SER 372
H	MET 1	TYR 375
I	MET 1	LYS 373
J	MET 1	ALA 374
K	MET 1	LYS 373
G	MET 1	GLY 362
B	PRO 4	PHE 378
M	A 6	T 54
D	MET 1	SER 264
A	G -7	G -7

There are115 helices in PDB entry 9JXS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	103	110	Right-handed alpha
Helix 2	AA2	C	120	143	Right-handed alpha
Helix 3	AA3	C	153	155	Right-handed 310
Helix 4	AA4	C	156	161	Right-handed alpha
Helix 5	AA5	C	187	191	Right-handed 310
Helix 6	AA6	C	215	224	Right-handed alpha
Helix 7	AA7	C	255	262	Right-handed alpha
Helix 8	AA8	C	288	293	Right-handed alpha
Helix 9	AA9	C	418	426	Right-handed alpha
Helix 10	AB1	C	428	437	Right-handed alpha
Helix 11	AB2	C	456	465	Right-handed alpha
Helix 12	AB3	C	467	474	Right-handed alpha
Helix 13	AB4	C	478	483	Right-handed alpha
Helix 14	AB5	C	486	498	Right-handed alpha
Helix 15	AB6	C	502	514	Right-handed alpha
Helix 16	AB7	E	4	14	Right-handed alpha
Helix 17	AB8	E	16	25	Right-handed alpha
Helix 18	AB9	E	34	46	Right-handed alpha
Helix 19	AC1	E	57	72	Right-handed alpha
Helix 20	AC2	E	80	91	Right-handed alpha
Helix 21	AC3	E	96	107	Right-handed alpha
Helix 22	AC4	E	108	111	Right-handed 310
Helix 23	AC5	E	113	115	Right-handed 310
Helix 24	AC6	E	116	130	Right-handed alpha
Helix 25	AC7	E	136	145	Right-handed alpha
Helix 26	AC8	E	149	166	Right-handed alpha
Helix 27	AC9	F	38	48	Right-handed alpha
Helix 28	AD1	F	51	55	Right-handed 310
Helix 29	AD2	F	63	71	Right-handed alpha
Helix 30	AD3	F	78	89	Right-handed alpha
Helix 31	AD4	F	105	118	Right-handed alpha
Helix 32	AD5	F	122	135	Right-handed alpha
Helix 33	AD6	F	139	146	Right-handed alpha
Helix 34	AD7	F	223	229	Right-handed alpha
Helix 35	AD8	F	234	251	Right-handed alpha
Helix 36	AD9	F	281	285	Right-handed 310
Helix 37	AE1	F	295	313	Right-handed alpha
Helix 38	AE2	F	328	332	Right-handed 310
Helix 39	AE3	F	350	362	Right-handed alpha
Helix 40	AE4	F	365	370	Right-handed alpha
Helix 41	AE5	H	38	48	Right-handed alpha
Helix 42	AE6	H	52	56	Right-handed 310
Helix 43	AE7	H	63	73	Right-handed alpha
Helix 44	AE8	H	77	89	Right-handed alpha
Helix 45	AE9	H	106	117	Right-handed alpha
Helix 46	AF1	H	122	135	Right-handed alpha
Helix 47	AF2	H	140	146	Right-handed alpha
Helix 48	AF3	H	223	229	Right-handed alpha
Helix 49	AF4	H	233	251	Right-handed alpha
Helix 50	AF5	H	280	285	Right-handed 310
Helix 51	AF6	H	295	316	Right-handed alpha
Helix 52	AF7	H	329	332	Right-handed 310
Helix 53	AF8	H	349	362	Right-handed alpha
Helix 54	AF9	H	365	370	Right-handed alpha
Helix 55	AG1	I	38	48	Right-handed alpha
Helix 56	AG2	I	63	70	Right-handed alpha
Helix 57	AG3	I	85	89	Right-handed 310
Helix 58	AG4	I	105	112	Right-handed alpha
Helix 59	AG5	I	112	117	Right-handed alpha
Helix 60	AG6	I	124	134	Right-handed alpha
Helix 61	AG7	I	139	146	Right-handed alpha
Helix 62	AG8	I	223	230	Right-handed alpha
Helix 63	AG9	I	233	251	Right-handed alpha
Helix 64	AH1	I	281	286	Right-handed 310
Helix 65	AH2	I	295	315	Right-handed alpha
Helix 66	AH3	I	329	332	Right-handed 310
Helix 67	AH4	I	349	361	Right-handed alpha
Helix 68	AH5	I	367	373	Right-handed 310
Helix 69	AH6	J	38	48	Right-handed alpha
Helix 70	AH7	J	66	71	Right-handed alpha
Helix 71	AH8	J	79	88	Right-handed alpha
Helix 72	AH9	J	107	116	Right-handed alpha
Helix 73	AI1	J	122	134	Right-handed alpha
Helix 74	AI2	J	139	145	Right-handed alpha
Helix 75	AI3	J	223	230	Right-handed alpha
Helix 76	AI4	J	233	251	Right-handed alpha
Helix 77	AI5	J	256	261	Right-handed alpha
Helix 78	AI6	J	279	286	Right-handed 310
Helix 79	AI7	J	295	315	Right-handed alpha
Helix 80	AI8	J	329	332	Right-handed 310
Helix 81	AI9	J	349	362	Right-handed alpha
Helix 82	AJ1	J	367	372	Right-handed 310
Helix 83	AJ2	K	12	16	Right-handed 310
Helix 84	AJ3	K	38	48	Right-handed alpha
Helix 85	AJ4	K	63	69	Right-handed alpha
Helix 86	AJ5	K	78	89	Right-handed alpha
Helix 87	AJ6	K	107	116	Right-handed alpha
Helix 88	AJ7	K	121	133	Right-handed alpha
Helix 89	AJ8	K	139	146	Right-handed alpha
Helix 90	AJ9	K	223	230	Right-handed alpha
Helix 91	AK1	K	234	251	Right-handed alpha
Helix 92	AK2	K	280	285	Right-handed 310
Helix 93	AK3	K	296	316	Right-handed alpha
Helix 94	AK4	K	329	332	Right-handed 310
Helix 95	AK5	K	350	359	Right-handed alpha
Helix 96	AK6	K	365	370	Right-handed alpha
Helix 97	AK7	G	38	47	Right-handed alpha
Helix 98	AK8	G	223	228	Right-handed alpha
Helix 99	AK9	G	235	248	Right-handed alpha
Helix 100	AL1	G	279	286	Right-handed 310
Helix 101	AL2	G	295	310	Right-handed alpha
Helix 102	AL3	G	329	332	Right-handed 310
Helix 103	AL4	G	350	362	Right-handed alpha
Helix 104	AL5	B	36	49	Right-handed alpha
Helix 105	AL6	B	144	153	Right-handed alpha
Helix 106	AL7	B	185	192	Right-handed alpha
Helix 107	AL8	B	283	294	Right-handed alpha
Helix 108	AL9	B	329	342	Right-handed alpha
Helix 109	AM1	B	358	372	Right-handed alpha
Helix 110	AM2	D	19	25	Right-handed alpha
Helix 111	AM3	D	27	37	Right-handed alpha
Helix 112	AM4	D	99	103	Right-handed 310
Helix 113	AM5	D	170	183	Right-handed alpha
Helix 114	AM6	D	243	251	Right-handed alpha
Helix 115	AM7	D	255	259	Right-handed 310

There are 34 sheets in PDB entry 9JXS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	114	116	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	325	329	anti-parallel
Strand 3	C	297	299	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	248	252	first strand
Strand 2	C	389	394	anti-parallel
Strand 3	C	406	410	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	397	398	first strand
Strand 2	C	401	402	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	25	29	first strand
Strand 2	F	32	37	anti-parallel
Strand 3	F	176	178	anti-parallel
Strand 4	F	214	222	anti-parallel
Strand 5	F	2	10	anti-parallel
Strand 6	F	269	274	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	58	61	first strand
Strand 2	F	101	104	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	185	189	first strand
Strand 2	F	206	210	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	26	29	first strand
Strand 2	H	32	37	anti-parallel
Strand 3	H	176	178	anti-parallel
Strand 4	H	208	222	anti-parallel
Strand 5	H	185	187	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	171	173	first strand
Strand 2	H	208	222	anti-parallel
Strand 3	H	2	14	anti-parallel
Strand 4	H	268	274	anti-parallel
Strand 5	H	323	327	anti-parallel
Strand 6	H	345	347	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	61	first strand
Strand 2	H	101	104	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	215	222	anti-parallel
Strand 5	I	171	173	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	26	29	first strand
Strand 2	I	32	37	anti-parallel
Strand 3	I	176	178	anti-parallel
Strand 4	I	215	222	anti-parallel
Strand 5	I	2	8	anti-parallel
Strand 6	I	268	274	anti-parallel
Strand 7	I	323	327	anti-parallel
Strand 8	I	345	347	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	185	192	first strand
Strand 2	I	203	210	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	171	173	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	26	29	first strand
Strand 2	J	32	37	anti-parallel
Strand 3	J	176	178	anti-parallel
Strand 4	J	214	222	anti-parallel
Strand 5	J	2	10	anti-parallel
Strand 6	J	268	274	anti-parallel
Strand 7	J	323	327	anti-parallel
Strand 8	J	345	347	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	59	61	first strand
Strand 2	J	101	104	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	185	190	first strand
Strand 2	J	205	210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	26	29	first strand
Strand 2	K	32	37	anti-parallel
Strand 3	K	176	178	anti-parallel
Strand 4	K	213	222	anti-parallel
Strand 5	K	171	173	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	26	29	first strand
Strand 2	K	32	37	anti-parallel
Strand 3	K	176	178	anti-parallel
Strand 4	K	213	222	anti-parallel
Strand 5	K	2	11	anti-parallel
Strand 6	K	268	274	anti-parallel
Strand 7	K	323	327	anti-parallel
Strand 8	K	346	347	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	58	61	first strand
Strand 2	K	101	104	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	147	148	first strand
Strand 2	K	166	167	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	2	3	first strand
Strand 2	G	221	222	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	9	first strand
Strand 2	G	215	217	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	25	29	first strand
Strand 2	G	32	36	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	184	186	first strand
Strand 2	G	209	211	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	269	271	first strand
Strand 2	G	325	327	anti-parallel
Strand 3	G	346	347	parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	12	first strand
Strand 2	B	136	139	anti-parallel
Strand 3	B	69	74	anti-parallel
Strand 4	B	210	212	anti-parallel
Strand 5	B	248	250	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	28	29	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	17	first strand
Strand 2	B	127	133	anti-parallel
Strand 3	B	77	83	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	230	first strand
Strand 2	B	245	246	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	310	first strand
Strand 2	B	325	328	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	108	109	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	73	first strand
Strand 2	D	78	85	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	126	129	first strand
Strand 2	D	222	232	anti-parallel
Strand 3	D	191	202	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9JXS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9JXS